View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_high_8 (Length: 492)
Name: NF20570_high_8
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 109 - 477
Target Start/End: Original strand, 18000732 - 18001099
Alignment:
| Q |
109 |
ggggaccggaaatattcataatactaacctgaatgagatgcaacgattcccgcaagagccaactgccnnnnnnnnta-tcatatcaaatcttactaacaa |
207 |
Q |
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| T |
18000732 |
ggggaccagaaatattcataatactaaccagaatgagatgcaacgattcccgcaagagccaactgccaaaaaaaaaaatcatatcagatcttgctaacaa |
18000831 |
T |
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| Q |
208 |
tatttatcttcacgtcttctctctacatgtgaatatcacattagtaagttttcaccatcttttctataataggagttaccctctgcatcttttatgtcat |
307 |
Q |
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| T |
18000832 |
tatttatcttcacgtcttctctctacatgtgaataccacattagtaagttttcaccatcttttatatgataggagttaccctctacatcttttatgtcat |
18000931 |
T |
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| Q |
308 |
tatttctaatttcaaaagtatctcctatattttcaaatattgaggaaagaattttatataatcttacagaatgacaaataattatgaaataaattgagac |
407 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18000932 |
tatttctaatttcaaaagtatctcctat--tttcaaatattgaggaaagaattttatataatcttacagaatgacaaataattatgaaataaattgagac |
18001029 |
T |
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| Q |
408 |
agaaagaagaaaatagcttacagagaatagagttaaaacggataaatatgttgaccccatttaggctatt |
477 |
Q |
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| T |
18001030 |
agaaagaagaaaatagcttacagagaatagagttaaaacggataaatatgtagaccccatttaggctatt |
18001099 |
T |
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