View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_high_80 (Length: 224)
Name: NF20570_high_80
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_high_80 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 34245217 - 34245405
Alignment:
| Q |
18 |
catttcaatttcatatcaactcgtttctactgtaattgcatgctattcagttaatctaattctatgcatttgtttagataagtggttgatggtcatttag |
117 |
Q |
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| T |
34245217 |
catttcaatttcatatcaactcgtttctactgtaattgcatgctattcagttaatctaattctatgcatttgtttagataagtggttgatggtcatttag |
34245316 |
T |
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| Q |
118 |
gagattttcttaaatcacacggcttgggtttttaataagtaaattgagaaactatttgacttttgaaattttagaattctctatcgatatt |
208 |
Q |
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| T |
34245317 |
gagattttcttaaatcacacggcttgggtttttaataagtaaattgagaa--tatttgacttttgaaattttagaattctctatcgatatt |
34245405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 137
Target Start/End: Original strand, 29138801 - 29138898
Alignment:
| Q |
40 |
gtttctactgtaattgcatgctattcagttaatctaattctatgcatttgtttagataagtggttgatggtcatttaggagattttcttaaatcacac |
137 |
Q |
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| T |
29138801 |
gtttctgctataattgcatgctatttggttacttggattctatgtatttgtttagataagtggttgatggtcatttagtagtttttctccaatcacac |
29138898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 34254146 - 34254205
Alignment:
| Q |
72 |
tctaattctatgcatttgtttagataagtggttgatggtcatttaggagattttcttaaa |
131 |
Q |
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| T |
34254146 |
tctaattctatgcatttttttagataagagattgatggtcattcaggagattttcttaaa |
34254205 |
T |
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