View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_low_1 (Length: 933)
Name: NF20570_low_1
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 434; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 386 - 915
Target Start/End: Original strand, 29287403 - 29287922
Alignment:
| Q |
386 |
caaaaccctagttgataatttagctatgatctcatcactatttcggctgaacttaatcaattcccctaaattgtcgaattcagctgacaccctagctaaa |
485 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||| |
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| T |
29287403 |
caaatccctagttgataatttagctatgatctcatcactatttcggctgaacttaatcaat-cccctaaat-gtcgaattcagcagacaccctagctaaa |
29287500 |
T |
|
| Q |
486 |
taacaatatgttatatcatgttttgcaacacatgtgtttcctgtggtttttgtatctaggtttcatcttggatcaaatgaaacgacaattgcatgtgcat |
585 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29287501 |
taacaatatgttatatcatgttttgcaagacatgtgtttcctgtggtttttgtatctaggtttcatcttggatcaaatgaaacgacaattacatgtgcat |
29287600 |
T |
|
| Q |
586 |
ggcattagtatcgatggttagtaatatagtccccaaagcgtccattttgcagaatagaaaaatcttcaagaaagcacaatcatcatgtcctaatgcaatt |
685 |
Q |
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| T |
29287601 |
ggcattagtatcgatggttagta--------cctaaagcgtacattttgcagaatagaaaaatcttcaagaaagcacaatcatcatgtcctaatgcaatt |
29287692 |
T |
|
| Q |
686 |
ctcctaaggttaattaatcaattacttgtccaaattccaaactcttatcaattcaatagtaatatcttctttcgtaaggaaaacaacccacatgggagcc |
785 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29287693 |
ctcctaaggttaattaatcaattacttgtccaaattccaaactcttatcaattcaatagtaatatcttctttcgtaaggaaaacaacccacatgggagcc |
29287792 |
T |
|
| Q |
786 |
aatctccaaaactttcccattcccaatatgaaaataaataaataaataaaggagaatacaatgtactcactttttatttaccaacgtagggttgctgaca |
885 |
Q |
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| T |
29287793 |
aatctccaaaactttcccattcccaatatg-caataaataaataaataaagaagaatacaatgtactcactttttatttaccaacatagggttgctgaca |
29287891 |
T |
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| Q |
886 |
cacctttttggtca-tccatgtcacaccacg |
915 |
Q |
| |
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| T |
29287892 |
cacctttttggtcattccatgtcacaccacg |
29287922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 130 - 392
Target Start/End: Original strand, 29287105 - 29287370
Alignment:
| Q |
130 |
tagagaatctaaattgaacaagggacaaatttaagctactgcatttaagtttgaaaattttcataaaattaagtattgtttcatatatgaactttgataa |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29287105 |
tagagaatctaaattgaacaagggacaaatttaagctactgcatttaagtttgaaaattttcataaaattaaatattgtttcatatatgaactttgataa |
29287204 |
T |
|
| Q |
230 |
cacattgcacatgccataaacacgatt-gggtgacccatttgatgatattgatctttgaccagtaggatttggatcatttgctcccctcctacattcctt |
328 |
Q |
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| T |
29287205 |
cacattgcacatgccataaacacgattggggtgacccatttgatgatactgatctttgattagtaggatttggattatttgctcccctcctacactcctt |
29287304 |
T |
|
| Q |
329 |
gcatattttatg--tctatctatctcatcatcgtctcttcattttttccgtcacattcacaaaacc |
392 |
Q |
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| T |
29287305 |
gcatattttatgtctctatctatctcatcatcgtctcttcattttttccatcacattcacaaaacc |
29287370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 29284737 - 29284859
Alignment:
| Q |
7 |
tccaagaatataatcaagcacctggaaataatggacaagtctattttcttagtcaaaatgtgcacgagaggctagtaaatgagaaaaggtgtaaaaataa |
106 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29284737 |
tccaataatataatcaagcacctggaaataatggacatgtctattttcttagtcaaaatgtgcacgagaggctagtaaatgagaaaaggggtaaaaataa |
29284836 |
T |
|
| Q |
107 |
ggtttaaatcgcacaattgcaac |
129 |
Q |
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| T |
29284837 |
ggtttaaatcgcacaattgcaac |
29284859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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