View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20570_low_11 (Length: 488)
Name: NF20570_low_11
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 108 - 470
Target Start/End: Original strand, 55986368 - 55986730
Alignment:
| Q |
108 |
ataaaacatttaacaccaacaaaagcaagatacgtatgttagacttcaccaaagtaaagaggacaggtgcaaatgcacataatatactctcgaaagatta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
55986368 |
ataaaacatttaacaccaacaaaagcaagataggtatgttagacttcaccaaagtaaagaggacaggtgcaaatgcacataacatactctcgaaagatta |
55986467 |
T |
|
| Q |
208 |
gtaccagaacattcaacgtattgttcatcaatgagtttctgaggtcagaaatacttgaatgcttcataattaattacaactagcaaatcaaaacaataaa |
307 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55986468 |
gtaccgaaacattcaacgtattgttcatcaatgagtttctgaggtcagaaatacttga-tgcttcataattaattacaactagcaaatcaaaacaataaa |
55986566 |
T |
|
| Q |
308 |
a-aacacaaactaattgccgtcttgcgacttgcgttgaggcattcagtaattccagtgataccagacagaaaatcacatgctctggagcaccatagaatc |
406 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
55986567 |
aaaacacaaactaattgccgtcttgcgacttgcgttgaggcattcagtaattccagtgataccagacagaaaatcacattctctggagcaccatagaatc |
55986666 |
T |
|
| Q |
407 |
aacaaacgcaagaaggaataaaaaggtccatccctaatccctaagcaatctcaatttatttatg |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
55986667 |
aacaaacgcaagaaggaataaaaaggtccatctctaatccctaagcaatctcaatttatttatg |
55986730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 31 - 116
Target Start/End: Original strand, 55984679 - 55984764
Alignment:
| Q |
31 |
agcacgagttagtgtattaaagcaattaaaaaacatcattataaatgtatcaatgttatgcaatataaagttcataaataaaacat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55984679 |
agcacgagttagtgtattaaagcaattaaaaaacatcattataaatgtatcaatgttatgcaatataaagttcataaataaaacat |
55984764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 310
Target Start/End: Complemental strand, 33552167 - 33552124
Alignment:
| Q |
266 |
atgcttcataattaattacaactagcaaatcaaaacaataaaaaa |
310 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33552167 |
atgcttcataattaat-acaactagcaaatcaaaacaataaaaaa |
33552124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 428
Target Start/End: Complemental strand, 31782281 - 31782213
Alignment:
| Q |
360 |
cagtgataccagacagaaaatcacatgctctggagcaccatagaatcaacaaacgcaagaaggaataaa |
428 |
Q |
| |
|
|||||||| || ||| |||||| ||||| || |||||||||||||||||||||| |||| | ||||||| |
|
|
| T |
31782281 |
cagtgatatcaaacacaaaatcgcatgcgctagagcaccatagaatcaacaaacacaagcaagaataaa |
31782213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University