View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_low_12 (Length: 486)
Name: NF20570_low_12
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_low_12 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 234 - 349
Target Start/End: Original strand, 184094 - 184209
Alignment:
| Q |
234 |
cctcaacgtatttcggggagaaccagctagctctaggttcgagtggcatttcaccgctaaccacaactcattcgctgatttttcaacatcagttggtttg |
333 |
Q |
| |
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|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| | |
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| T |
184094 |
cctcaacgcatttcggggagaaccagctagctctgggttcgagtggcatttcaccgctaaccacaactcatccgctgatttttcaacatcagtcggttcg |
184193 |
T |
|
| Q |
334 |
gacctccacttagttt |
349 |
Q |
| |
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|||||||||||||||| |
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| T |
184194 |
gacctccacttagttt |
184209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 7e-47; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 234 - 349
Target Start/End: Complemental strand, 493422 - 493307
Alignment:
| Q |
234 |
cctcaacgtatttcggggagaaccagctagctctaggttcgagtggcatttcaccgctaaccacaactcattcgctgatttttcaacatcagttggtttg |
333 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| | |
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| T |
493422 |
cctcaacgcatttcggggagaaccagctagctctgggttcgagtggcatttcaccgctaaccacaactcatccgctgatttttcaacatcagtcggttcg |
493323 |
T |
|
| Q |
334 |
gacctccacttagttt |
349 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
493322 |
gacctccacttagttt |
493307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 234 - 349
Target Start/End: Complemental strand, 18191083 - 18190968
Alignment:
| Q |
234 |
cctcaacgtatttcggggagaaccagctagctctaggttcgagtggcatttcaccgctaaccacaactcattcgctgatttttcaacatcagttggtttg |
333 |
Q |
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|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| | |
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| T |
18191083 |
cctcaacgcatttcggggagaaccagctagctctgggttcgagtggcatttcaccgctaaccacaactcatccgctgatttttcaacatcagtcggttcg |
18190984 |
T |
|
| Q |
334 |
gacctccacttagttt |
349 |
Q |
| |
|
|||||||||||||||| |
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| T |
18190983 |
gacctccacttagttt |
18190968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 234 - 349
Target Start/End: Original strand, 50182923 - 50183038
Alignment:
| Q |
234 |
cctcaacgtatttcggggagaaccagctagctctaggttcgagtggcatttcaccgctaaccacaactcattcgctgatttttcaacatcagttggtttg |
333 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||| || |||||||||||| ||||| |||||| |
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| T |
50182923 |
cctcaacgcatttcggggagaaccagctagctctgggtttgagtggcatttcaccgctatccacaactcatccgttgatttttcaacttcagtcggtttg |
50183022 |
T |
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| Q |
334 |
gacctccacttagttt |
349 |
Q |
| |
|
|||||||||||||||| |
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| T |
50183023 |
gacctccacttagttt |
50183038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 234 - 341
Target Start/End: Complemental strand, 16006342 - 16006235
Alignment:
| Q |
234 |
cctcaacgtatttcggggagaaccagctagctctaggttcgagtggcatttcaccgctaaccacaactcattcgctgatttttcaacatcagttggtttg |
333 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| | |
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|
| T |
16006342 |
cctcaacgcatttcagggagaaccagctagctctgggttcgagtggcatttcaccgctaaccacaactcatccgctgatttttcaacatcagtcggttcg |
16006243 |
T |
|
| Q |
334 |
gacctcca |
341 |
Q |
| |
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|||||||| |
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| T |
16006242 |
gacctcca |
16006235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 234 - 349
Target Start/End: Complemental strand, 34656690 - 34656575
Alignment:
| Q |
234 |
cctcaacgtatttcggggagaaccagctagctctaggttcgagtggcatttcaccgctaaccacaactcattcgctgatttttcaacatcagttggtttg |
333 |
Q |
| |
|
|||||||| |||| | |||||||||||||||||| ||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||| |||| | |
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|
| T |
34656690 |
cctcaacgcattttgaggagaaccagctagctctgggttcgagtggcatttcaccgctaatcacaattcatccgctgatttttcaacatcagtcggttcg |
34656591 |
T |
|
| Q |
334 |
gacctccacttagttt |
349 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
34656590 |
gacctccacttagttt |
34656575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 50292012 - 50292062
Alignment:
| Q |
6 |
ttttccataaattgataatgctgacaggctaattgaaaagagagaagttta |
56 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
50292012 |
ttttccataaattgataatgctgacaggctaattgaaaggagagaagttta |
50292062 |
T |
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