View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_low_13 (Length: 482)
Name: NF20570_low_13
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_low_13 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 2491406 - 2491100
Alignment:
| Q |
1 |
gatatgcgacctagttcagagacataaaatgctaagagcaattcccattgggaatttctgtgtttttaagctt---aactaactgttatttgttgtgttt |
97 |
Q |
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| T |
2491406 |
gatatgcgacctagttcagagacataaaatgctaagagcaattcccattgggagtttctgtgtttttaagcttcttaactaactgttatttgttgtgttt |
2491307 |
T |
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| Q |
98 |
cgccattggaacatgtttatgtggtagacatgattgtttaaagctgcctttgcataaagaacctttgcttaaatgtaaaaatatggatttactccatcaa |
197 |
Q |
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| T |
2491306 |
cgccattggaacatgtttatgtggtagacatgattgtttaaagctgcctttgcataaagaacctttgcttaaatgtaaaaatatggatttactccatcaa |
2491207 |
T |
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| Q |
198 |
atctcaacgcttggagtaaaaaatgatagagtcgcgggagttgcactattagattaaaatgtgattgaaatcttaaaagcaacatggcatgataagatcc |
297 |
Q |
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| T |
2491206 |
atctcaacgcttggagtaaaaaatgatagagtcgcgggagttgcactattagattaaaatgtgattgaaatcttaaaagcaacatggcataataagatcc |
2491107 |
T |
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| Q |
298 |
acctaat |
304 |
Q |
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||||||| |
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| T |
2491106 |
acctaat |
2491100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 325 - 482
Target Start/End: Complemental strand, 2491069 - 2490912
Alignment:
| Q |
325 |
ttaatcatatcattagagaggctcaaatgcagattaaagaaaaagaattctaccggattactataataaaatactgcttttccggttataaagtaatctt |
424 |
Q |
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| T |
2491069 |
ttaatcatatcattagagaggctcaaatgcagattaaagaaaaagaattctaccggattactataataaaatactgcttttccggttataaagtaatctt |
2490970 |
T |
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| Q |
425 |
acctgactctttgccattttgaagtcctgcatattcaaaggcctaagggtaataactc |
482 |
Q |
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| T |
2490969 |
acctgactctttgccattttgaagtcctgcatattcaaaggcctaagggtaataactc |
2490912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 361
Target Start/End: Complemental strand, 2491096 - 2491066
Alignment:
| Q |
331 |
atatcattagagaggctcaaatgcagattaa |
361 |
Q |
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| T |
2491096 |
atatcattagagaggctcaaatgcagattaa |
2491066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 425 - 482
Target Start/End: Original strand, 41589158 - 41589215
Alignment:
| Q |
425 |
acctgactctttgccattttgaagtcctgcatattcaaaggcctaagggtaataactc |
482 |
Q |
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|||||| |||| ||| |||||| |||||||||||||| ||||||||||||||||||| |
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| T |
41589158 |
acctgattcttggcctctttgaaatcctgcatattcaatggcctaagggtaataactc |
41589215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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