View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_low_14 (Length: 476)
Name: NF20570_low_14
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 40375664 - 40375934
Alignment:
| Q |
19 |
tgttaacattttattattacatgaaaagtgggtccaatggtcaaattgaaaaagcatgaaatgaaacattgttatagcaaaatcttgttaaaaaagtcac |
118 |
Q |
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| T |
40375664 |
tgttaacattttattattacatgaaaagtgggtccaatggtcaaattgaaaaagcatgaaatgaaacattgttatagcaaaatcttgttaaaaaagtcac |
40375763 |
T |
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| Q |
119 |
atgtttaatgatgcttttaaccgaaaagttatggttgaagcgtgtcactcctcttctttcctcctcctaactattgttgttgtagcatagggtggtagct |
218 |
Q |
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| T |
40375764 |
atgtttaatgatgcttttaaccgaaaagttatggttgaagcgtgtccctcctcttcttccctcctcctaactattgttgttgtagcatagggtggtagct |
40375863 |
T |
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| Q |
219 |
tcaaaaccaaaccttagttcatgacacaaacctttgtgttctgtacgctatatcacacaacctagttcact |
289 |
Q |
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| T |
40375864 |
tcaaaaccaaaccttagttcatgacacaaacctttgtgttgtgtacgctatatcacacaacctagttcact |
40375934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 333 - 441
Target Start/End: Complemental strand, 40375283 - 40375176
Alignment:
| Q |
333 |
taattttgatctttttcaatgtttagtgataacatccttctatatacgatgttatttgggtaatgaatcgtatctacgaaagctttgaatacagtttata |
432 |
Q |
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| T |
40375283 |
taatttggatcgttttcaatgtgttgtgttaacatccatctatatactatgttttttgt-tgatgaatcttatctacgaaagctttgaatacattttata |
40375185 |
T |
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| Q |
433 |
agttgtttg |
441 |
Q |
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| T |
40375184 |
agttgtttg |
40375176 |
T |
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