View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_low_18 (Length: 439)
Name: NF20570_low_18
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 17 - 427
Target Start/End: Original strand, 1415123 - 1415530
Alignment:
| Q |
17 |
actaaaagtattattacaccaatattatgcaataatactttcacttccctgaattttgaagaattgtaataatagtgtatactatttgaatatacaatat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||| ||||||||||||||| |||||||||||||||||| |
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| T |
1415123 |
actaaaagtattattacaccaatattatgcaataatactttcacttcactga-ttttgaagtattctaataatagtgtataatatttgaatatacaatat |
1415221 |
T |
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| Q |
117 |
ttaatccaactctcccccatctagacataataactttaaaatcttatgtcattactacaatacaaccccaaaatttgtttgaatttcttacagacatata |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| | ||||||||||||||||||| ||||||| |
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| T |
1415222 |
ttaatccaactctcccccatctagacataataactttaaaatct-atgtcattactacaatacagccccagagtttgtttgaatttcttacaaacatata |
1415320 |
T |
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| Q |
217 |
tttgccctattttctcaaccaattctttgttaatcatatctgatttttccttcttgacaatactaagtactaatttgacaaataaatgcgacccatattc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| |
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| T |
1415321 |
tttgccctattttctcaaccaattctttgttaatcatatctgatttttccttcttgacaatactaaatactaatttgacaaataaatgtgacccgtattc |
1415420 |
T |
|
| Q |
317 |
atttatctttttaagatatacttttctacaaactcaaagttttgacacgcaaaaaatggaatgtcaaagggagtgacctgacagtcatgttaatttatct |
416 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
1415421 |
atttatctttttaagatatacttttctacaaacgcaaagttttgacacgcaaagaatggaatgtc-aagggagtgacctgacagtcatgctaatttatct |
1415519 |
T |
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| Q |
417 |
ttttgtccctt |
427 |
Q |
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| T |
1415520 |
ttttgtccctt |
1415530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 19 - 419
Target Start/End: Original strand, 1421486 - 1421884
Alignment:
| Q |
19 |
taaaagtattattacaccaatattatgcaataatactttcacttccctgaattttgaagaattgtaataatagtgtatactatttgaatatacaatattt |
118 |
Q |
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||||||||||||||||||||||||||| |||||||||| |||||| || | |||||||| ||| ||||| |||||||||||||||||| ||||||||| | |
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| T |
1421486 |
taaaagtattattacaccaatattatgtaataatacttccacttcact-agttttgaagtattctaatagtagtgtatactatttgaagatacaatatgt |
1421584 |
T |
|
| Q |
119 |
aatccaactctcccccatctagacataataactttaaaat-cttatgtc-attactacaatacaa----ccccaaaatttgtttgaatttcttacagaca |
212 |
Q |
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|||| || ||||||||||||||||| || || ||||||| |||||||| || ||||||||| | ||||||| |||||||||||||| ||| |
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| T |
1421585 |
aatcaaaatctcccccatctagacaaaaaaaacttaaaattcttatgtccatgactacaatatataaagccccaaagtttgtttgaatttcc-----aca |
1421679 |
T |
|
| Q |
213 |
tatatttgccctattttctcaaccaattctttgttaatcatatctgatttttccttcttgacaatactaagtactaatttgacaaataaatgcgacccat |
312 |
Q |
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||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| || ||||||| |||||||||| |
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| T |
1421680 |
aatatttgccctatcttcttaaccaattctttgttaataatatctgatttttccttcttgacaatactaagcactaatatgtcaaataattgcgacccat |
1421779 |
T |
|
| Q |
313 |
attcatttatctttttaagatatacttttct-acaaactcaaagttttgacacgcaaaaaatggaatgtcaaagggagtgacctgacagtcatgttaatt |
411 |
Q |
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||||| |||||||||||||||||||||||| ||||||| |||||||| ||||| ||| || |||||||| |||| ||||| ||||||||| ||||| |
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| T |
1421780 |
attca--tatctttttaagatatacttttctaacaaactgaaagttttcacacgtaaagaagggaatgtc-aaggatgtgacgtgacagtcagactaatt |
1421876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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