View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_low_19 (Length: 437)
Name: NF20570_low_19
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 2490508 - 2490935
Alignment:
| Q |
1 |
aggaactcgcaactatgactgaaggatatagtggaagtgatctgaaggtttttctctattattgttttcctatggccgtaacttaactatcgtgttacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2490508 |
aggaactcgcaactatgactgaaggatatagtggaagtgatctgaaggtttttctctattattgttttcctatggccgtaacttaactatcgtgttacaa |
2490607 |
T |
|
| Q |
101 |
tctacaaatgcttttcttatgtttagtttctgatgtcttaatgcattttccattttcattaattgttaaatgcagaacttatgcacaaccgctgcttata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2490608 |
tctacaaatgcttttcttatgtttagtttctgatgtcttaatgcattttccattttcattaattgttaaatgcagaacttatgcacaaccgctgcttata |
2490707 |
T |
|
| Q |
201 |
gacctgttagagagctaattcagcaagagatacaaaaggattcggtaacttggcaatttctctaaagatttactataatcctattatcctatgattatca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2490708 |
gacctgttagagagctaattcagcaagagatacaaaaggattcggtaacttggcaatttctctaaagatttactataatcctattatcctatgattatca |
2490807 |
T |
|
| Q |
301 |
tgctgattgctatatttgttttcgacagcagaaaaagaagaaagatgccgaaggacaaaatagccaagatgctcaggatgcgaaagaggaggttgagcag |
400 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2490808 |
tgctgattgctatatttgttttcggcagcagaaaaagaagaaagatgccgaaggacaaaatagccaagatgctcaggatgcgaaagaggaagttgagcag |
2490907 |
T |
|
| Q |
401 |
gaaagagttattacccttaggcctttga |
428 |
Q |
| |
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| T |
2490908 |
gaaagagttattacccttaggcctttga |
2490935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 41589494 - 41589433
Alignment:
| Q |
169 |
aatgcagaacttatgcacaaccgctgcttatagacctgttagagagctaattcagcaagaga |
230 |
Q |
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|||||||||||| |||||||| ||||||||| | || ||||||||| | ||||||||||||| |
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|
| T |
41589494 |
aatgcagaacttgtgcacaactgctgcttatcggccagttagagagttgattcagcaagaga |
41589433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 45989453 - 45989493
Alignment:
| Q |
10 |
caactatgactgaaggatatagtggaagtgatctgaaggtt |
50 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||| |
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| T |
45989453 |
caactatgacagaaggatatagtggaagtgatcttaaggtt |
45989493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 44936073 - 44936113
Alignment:
| Q |
10 |
caactatgactgaaggatatagtggaagtgatctgaaggtt |
50 |
Q |
| |
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|||||||||| ||||||||||| ||||||||||| |||||| |
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| T |
44936073 |
caactatgacagaaggatatagcggaagtgatcttaaggtt |
44936113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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