View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_low_20 (Length: 431)
Name: NF20570_low_20
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 20 - 428
Target Start/End: Complemental strand, 29946821 - 29946413
Alignment:
| Q |
20 |
ttaagaacacagagcaggtaattgaattgatgtaatgttgttgttgagtgtgagcaaacgtttgaagtgtgtgtaatggtttcggttttgttgtacaggt |
119 |
Q |
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| T |
29946821 |
ttaagaacacacagcaggtaattgaattgatgaaatgttgttgttgagtgtgagcaaacgtttgaagtgtgtgtaatggttttggttttgttgtacaggt |
29946722 |
T |
|
| Q |
120 |
tttggagcagttgccgagagtaatatcgtcgctggatgcacacatggaaaatgggttgcaaaagttagaatcttttcttctctaattgataagtcattat |
219 |
Q |
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||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29946721 |
tttagagcagttgccgagagtaatatcgtctctggatgcacacatggaaaatgggttgcaaaagttagaatcttttcttctctaattgataagtcattat |
29946622 |
T |
|
| Q |
220 |
gactgtgttgttttattatcgttatacatgtatattttgaactcaagtggcttttgaaatgttattatcatgagctttaacttcgtgctgaaactgttat |
319 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29946621 |
gactgtgttgtattattatcgttatacatgtatattttgaattcaagtggcttttgaaatgttattatcatgagctttaacttcgtgctgaaactgttat |
29946522 |
T |
|
| Q |
320 |
attcatcttgaatatatattctatcgatggctactgattacgtaaaacagcgatttgttcaaattagtatattacataatagcactatagcgcctgccta |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29946521 |
attcatcttgaatatatattctatcgatggctactgattacataaaacagcgatttgttcaaattagtatgttacataatagcactatagcgcctgccta |
29946422 |
T |
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| Q |
420 |
tgttactgc |
428 |
Q |
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| T |
29946421 |
tgtaactgc |
29946413 |
T |
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