View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20570_low_22 (Length: 422)

Name: NF20570_low_22
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20570_low_22
NF20570_low_22
[»] chr8 (19 HSPs)
chr8 (63-296)||(21587651-21587883)
chr8 (148-295)||(13757022-13757169)
chr8 (177-296)||(37364858-37364977)
chr8 (139-296)||(23141269-23141426)
chr8 (206-296)||(42796825-42796916)
chr8 (356-406)||(21587943-21587993)
chr8 (219-271)||(10279911-10279963)
chr8 (176-271)||(361310-361408)
chr8 (14-55)||(21587544-21587585)
chr8 (63-98)||(23141206-23141241)
chr8 (176-271)||(23684341-23684439)
chr8 (176-271)||(41526717-41526815)
chr8 (221-271)||(14377239-14377289)
chr8 (203-271)||(12158470-12158539)
chr8 (203-271)||(19261646-19261715)
chr8 (225-266)||(35224618-35224659)
chr8 (202-289)||(16221317-16221405)
chr8 (362-406)||(23141514-23141558)
chr8 (362-406)||(42797004-42797048)
[»] chr4 (14 HSPs)
chr4 (63-296)||(39975887-39976124)
chr4 (63-296)||(282966-283199)
chr4 (149-293)||(13230428-13230572)
chr4 (356-406)||(39975777-39975827)
chr4 (356-406)||(282856-282906)
chr4 (203-271)||(22678725-22678794)
chr4 (14-55)||(39976189-39976230)
chr4 (198-271)||(6554843-6554917)
chr4 (231-293)||(13668627-13668689)
chr4 (231-293)||(13681484-13681546)
chr4 (14-55)||(283265-283306)
chr4 (219-271)||(17449674-17449726)
chr4 (219-271)||(50163382-50163434)
chr4 (204-271)||(55051171-55051239)
[»] chr3 (16 HSPs)
chr3 (63-296)||(36097143-36097375)
chr3 (66-296)||(12745342-12745582)
chr3 (177-296)||(50331505-50331624)
chr3 (356-406)||(36097032-36097082)
chr3 (176-271)||(2251237-2251335)
chr3 (159-221)||(29195986-29196048)
chr3 (176-295)||(10976150-10976274)
chr3 (356-406)||(12745642-12745692)
chr3 (14-55)||(36097450-36097491)
chr3 (220-271)||(52072-52123)
chr3 (176-271)||(39184422-39184520)
chr3 (176-271)||(40058034-40058132)
chr3 (15-56)||(12745234-12745275)
chr3 (222-271)||(14233093-14233142)
chr3 (204-271)||(40415830-40415898)
chr3 (362-406)||(50331695-50331739)
[»] chr5 (9 HSPs)
chr5 (63-296)||(33012732-33012965)
chr5 (177-296)||(38012572-38012692)
chr5 (359-406)||(33013028-33013075)
chr5 (176-271)||(9025255-9025352)
chr5 (176-271)||(23570311-23570409)
chr5 (63-124)||(9049041-9049102)
chr5 (14-55)||(33012625-33012666)
chr5 (204-271)||(4063286-4063354)
chr5 (220-296)||(9012423-9012498)
[»] scaffold0036 (3 HSPs)
scaffold0036 (139-296)||(49098-49256)
scaffold0036 (359-405)||(49319-49365)
scaffold0036 (201-296)||(49930-50024)
[»] chr2 (10 HSPs)
chr2 (139-295)||(41753637-41753793)
chr2 (155-293)||(5787763-5787901)
chr2 (201-271)||(6911581-6911652)
chr2 (210-296)||(17680629-17680718)
chr2 (176-271)||(31965530-31965626)
chr2 (220-271)||(20444395-20444446)
chr2 (231-270)||(36726634-36726673)
chr2 (64-116)||(6467534-6467586)
chr2 (362-406)||(41753879-41753923)
chr2 (220-268)||(45659441-45659489)
[»] chr7 (4 HSPs)
chr7 (139-295)||(12978086-12978242)
chr7 (221-296)||(24708712-24708787)
chr7 (63-96)||(12978272-12978305)
chr7 (231-271)||(29865734-29865774)
[»] chr6 (12 HSPs)
chr6 (148-296)||(1600137-1600285)
chr6 (139-295)||(4850914-4851070)
chr6 (220-271)||(16707636-16707687)
chr6 (191-270)||(4789983-4790063)
chr6 (210-296)||(10191396-10191483)
chr6 (176-271)||(21986532-21986628)
chr6 (63-98)||(1600320-1600355)
chr6 (220-271)||(16705916-16705967)
chr6 (201-267)||(29213987-29214054)
chr6 (231-285)||(15618178-15618232)
chr6 (222-271)||(26895189-26895238)
chr6 (362-406)||(1600006-1600050)
[»] scaffold0159 (1 HSPs)
scaffold0159 (155-293)||(32136-32274)
[»] scaffold0380 (3 HSPs)
scaffold0380 (177-284)||(15550-15660)
scaffold0380 (199-269)||(14808-14879)
scaffold0380 (362-406)||(15430-15474)
[»] chr1 (9 HSPs)
chr1 (149-257)||(43386142-43386251)
chr1 (201-268)||(31420928-31420995)
chr1 (176-271)||(21467415-21467513)
chr1 (176-271)||(19102446-19102544)
chr1 (176-271)||(49882104-49882202)
chr1 (198-271)||(15530435-15530509)
chr1 (221-271)||(31090044-31090094)
chr1 (204-271)||(17001910-17001978)
chr1 (204-271)||(34161273-34161341)
[»] scaffold0284 (1 HSPs)
scaffold0284 (176-271)||(515-613)
[»] scaffold0021 (1 HSPs)
scaffold0021 (201-271)||(128768-128839)
[»] scaffold0051 (1 HSPs)
scaffold0051 (219-271)||(17625-17677)
[»] scaffold0211 (1 HSPs)
scaffold0211 (198-271)||(18161-18235)
[»] scaffold0061 (1 HSPs)
scaffold0061 (242-296)||(43518-43571)
[»] scaffold0017 (1 HSPs)
scaffold0017 (242-296)||(155215-155268)


Alignment Details
Target: chr8 (Bit Score: 175; Significance: 4e-94; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 63 - 296
Target Start/End: Original strand, 21587651 - 21587883
Alignment:
Q  63 gagttattggaaattttatggtttagttgaaggagttaaaaatttatgagtagttatttcaccaacnnnnnnnnngactcaattgaaaaatgtcacataa 162  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||| ||| |||    
T  21587651 gagttattggtaattttatggtttagttgaaggagttaaaaatttatgagtagttatttcaccaacaaaaaaaaagactcaattgaaaaatggcacttaa 21587750  T
Q  163 ttttaaaatattgttttgtcaacacagcaaaacacatgcattttttcattgttagatccaccaaagagcaaaagtgaaagaattttaaataatagaggtt 262  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21587751 ttttaaaatatcgttttgtcaacacggcaaaacacatgcattttttcatcgttagatcc-ccaaagagcaaaagtgaaagaattttaaataatagaggtt 21587849  T
Q  263 gaataaaaacatttgaatgaaagtgaatgacatc 296  Q
    ||||||||||||||||||||||||||||||||||    
T  21587850 gaataaaaacatttgaatgaaagtgaatgacatc 21587883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 148 - 295
Target Start/End: Complemental strand, 13757169 - 13757022
Alignment:
Q  148 aaaaatgtcacataattttaaaatattgttttgtcaacacagcaaaacacatgcattttttcattgttagatcc-accaaagagcaaaagtgaaagaatt 246  Q
    ||||||| ||||| |||||||| | | | ||||||||| |||||||| |||| ||||||||||||||||||||| |||||| |||||||||||| | |||    
T  13757169 aaaaatgacacatgattttaaagtgtcgctttgtcaactcagcaaaa-acatacattttttcattgttagatcccaccaaaaagcaaaagtgaaggtatt 13757071  T
Q  247 ttaaataatagaggttgaataaaaacatttgaatgaaagtgaatgacat 295  Q
    ||| ||||||||||||||||||||||||||| |||||||| || |||||    
T  13757070 ttacataatagaggttgaataaaaacatttgcatgaaagtaaacgacat 13757022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 177 - 296
Target Start/End: Original strand, 37364858 - 37364977
Alignment:
Q  177 tttgtcaacacagcaaaacacatgcattttttcattgttagatc-caccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaacatt 275  Q
    ||||||||| |||||||| ||||||||||||||||||||||||| ||||||| |||||||||||| | |||||| ||||||||||||| |||||||||||    
T  37364858 tttgtcaactcagcaaaa-acatgcattttttcattgttagatcacaccaaaaagcaaaagtgaaggtattttacataatagaggttggataaaaacatt 37364956  T
Q  276 tgaatgaaagtgaatgacatc 296  Q
    || |||||||| |||||||||    
T  37364957 tgcatgaaagtaaatgacatc 37364977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 139 - 296
Target Start/End: Original strand, 23141269 - 23141426
Alignment:
Q  139 actcaattgaaaaatgtcacataattttaaaatattgttttgtcaacacagcaaaacacatgcattttttcattgttagatcc-accaaagagcaaaagt 237  Q
    |||||||  ||||||| ||||| |||||||| | | | ||||||||| |||||||| |||||||||||||||||||||||||| |||||| |||||||||    
T  23141269 actcaataaaaaaatgacacatgattttaaagtgtcgctttgtcaactcagcaaaa-acatgcattttttcattgttagatcctaccaaaaagcaaaagt 23141367  T
Q  238 gaaagaattttaaataatagaggttgaataaaaacatttgaatgaaagtgaatgacatc 296  Q
    ||| | |||||| |||||| | |||| |||||||| |||| |||||||| |||||||||    
T  23141368 gaaggtattttacataataaaagttggataaaaacttttgcatgaaagtaaatgacatc 23141426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 206 - 296
Target Start/End: Original strand, 42796825 - 42796916
Alignment:
Q  206 tttcattgttagatc-caccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaacatttgaatgaaagtgaatgacatc 296  Q
    ||||||||||||||| ||||||| |||||||||||| | |||||| ||||||||||||| ||||||||||||| || ||||| |||||||||    
T  42796825 tttcattgttagatcacaccaaaaagcaaaagtgaaggtattttacataatagaggttggataaaaacatttgcattaaagtaaatgacatc 42796916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 356 - 406
Target Start/End: Original strand, 21587943 - 21587993
Alignment:
Q  356 cagttcatcatgatgtttggagttcttagagtgcctacaatgagtttgatc 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21587943 cagttcatcatgatgtttggagttcttagagtgcctacaatgagtttgatc 21587993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 10279963 - 10279911
Alignment:
Q  219 tccaccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    ||||||||||| ||||||||||||||||| ||||||||| |||||||||||||    
T  10279963 tccaccaaagatcaaaagtgaaagaatttaaaataatagtggttgaataaaaa 10279911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 271
Target Start/End: Complemental strand, 361408 - 361310
Alignment:
Q  176 ttttgtcaacacagcaaaacacat--gcattttttcattgtta-gatccaccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    ||||||||||  ||||||||||||  ||||||||||||||| | | || |||||||| |||||||||| |||||| ||||||  |||||||||||||||    
T  361408 ttttgtcaacttagcaaaacacatatgcattttttcattgtgaagttctaccaaagaccaaaagtgaaggaatttgaaataagtgaggttgaataaaaa 361310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 21587544 - 21587585
Alignment:
Q  14 gaaattgtaaaaagaaagaatacaaaaaagtagtttgaaaat 55  Q
    ||||||||||||||||||||||| |||||||| |||||||||    
T  21587544 gaaattgtaaaaagaaagaatacgaaaaagtaatttgaaaat 21587585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 98
Target Start/End: Original strand, 23141206 - 23141241
Alignment:
Q  63 gagttattggaaattttatggtttagttgaaggagt 98  Q
    |||||||||| |||||||||||||||||||||||||    
T  23141206 gagttattggtaattttatggtttagttgaaggagt 23141241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 271
Target Start/End: Complemental strand, 23684439 - 23684341
Alignment:
Q  176 ttttgtcaacacagcaaaacacat--gcattttttcattgtta-gatccaccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    ||||||||||  ||||||||| ||  |||||||| |||||| | | || |||||||| |||||||||| |||||| ||||||  |||||||||||||||    
T  23684439 ttttgtcaacttagcaaaacatatatgcatttttccattgtgaagttctaccaaagatcaaaagtgaaggaatttgaaataagtgaggttgaataaaaa 23684341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 271
Target Start/End: Original strand, 41526717 - 41526815
Alignment:
Q  176 ttttgtcaacacagcaaaacacat--gcattttttcattgttagatcc-accaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    |||||||||| ||| | |||||||  |||||||| ||||||||||| | || ||||| | |||||||| |||||| ||||||  |||||||||||||||    
T  41526717 ttttgtcaactcagtagaacacatatgcatttttccattgttagattctacaaaagacccaaagtgaaggaatttgaaataagggaggttgaataaaaa 41526815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 14377289 - 14377239
Alignment:
Q  221 caccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    ||||||||| ||||||||||  ||||| |||||||||| ||||||||||||    
T  14377289 caccaaagaccaaaagtgaattaatttcaaataatagatgttgaataaaaa 14377239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 12158539 - 12158470
Alignment:
Q  203 ttttttcattgttagat-ccaccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    |||||||||||| | || ||| |||||| ||||| |||| |||||| |||||||||| ||||||||||||    
T  12158539 ttttttcattgtcacatgccatcaaagaccaaaattgaaggaatttaaaataatagaagttgaataaaaa 12158470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 19261646 - 19261715
Alignment:
Q  203 ttttttcattgttagat-ccaccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    |||||||||||| | || |||| ||||| ||||| |||| |||||| ||||||| |||||||||||||||    
T  19261646 ttttttcattgtcacatgccactaaagaccaaaattgaaggaatttaaaataatggaggttgaataaaaa 19261715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 35224618 - 35224659
Alignment:
Q  225 aaagagcaaaagtgaaagaattttaaataatagaggttgaat 266  Q
    ||||| ||||||||||||||||||||||||| ||| ||||||    
T  35224618 aaagaccaaaagtgaaagaattttaaataatggagattgaat 35224659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 289
Target Start/End: Original strand, 16221317 - 16221405
Alignment:
Q  202 attttttcattgttagatc-caccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaacatttgaatgaaagtgaa 289  Q
    |||||| |||||||| ||| ||||||| | | |||||||| |||||  |||||| |||||||||||||||| | | | |||||||||||    
T  16221317 atttttccattgttatatctcaccaaaaacctaaagtgaaggaattagaaataacagaggttgaataaaaaaactggcatgaaagtgaa 16221405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 406
Target Start/End: Original strand, 23141514 - 23141558
Alignment:
Q  362 atcatgatgtttggagttcttagagtgcctacaatgagtttgatc 406  Q
    |||||||||||  ||||||||||||||||||||||  ||||||||    
T  23141514 atcatgatgttcagagttcttagagtgcctacaataggtttgatc 23141558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 406
Target Start/End: Original strand, 42797004 - 42797048
Alignment:
Q  362 atcatgatgtttggagttcttagagtgcctacaatgagtttgatc 406  Q
    |||||||||||  ||||||||||||||||||||||  ||||||||    
T  42797004 atcatgatgttcagagttcttagagtgcctacaataggtttgatc 42797048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 166; Significance: 1e-88; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 63 - 296
Target Start/End: Complemental strand, 39976124 - 39975887
Alignment:
Q  63 gagttattggaaattttatggtttagttgaaggagttaaaaatttatgagtagttatttcaccaacnnnnnnnnn----gactcaattgaaaaatgtcac 158  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||    
T  39976124 gagttattggtaattttatggtttagttgaaggagttaaaaatttatgagtagttatttcaccaacagaaaaaaaaaaagactcaattgaaaaatgtcac 39976025  T
Q  159 ataattttaaaatattgttttgtcaacacagcaaaacacatgcattttttcattgttagatccaccaaagagcaaaagtgaaagaattttaaataataga 258  Q
    ||||||||||||||| ||||||||||| | |||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||    
T  39976024 ataattttaaaatatcgttttgtcaactcggcaaaacacatgcatttttttattgttagatctcccaaagagcaaaagtgaaagaattttaaataataga 39975925  T
Q  259 ggttgaataaaaacatttgaatgaaagtgaatgacatc 296  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39975924 ggttgaataaaaacatttgaatgaaagtgaatgacatc 39975887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 63 - 296
Target Start/End: Complemental strand, 283199 - 282966
Alignment:
Q  63 gagttattggaaattttatggtttagttgaaggagttaaaaatttatgagtagttatttcaccaacnnnnnnnnngactcaattgaaaaatgtcacataa 162  Q
    |||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||         |||||||||||||||||||||||||    
T  283199 gagttattggtagttttatggtttagttgaaggagttaaaaatttacgagtagttatttcaccaacaaaaaaaa-gactcaattgaaaaatgtcacataa 283101  T
Q  163 ttttaaaatattgttttgtcaacacagcaaaacacatgcattttttcattgttagatccac-caaagagcaaaagtgaaagaattttaaataatagaggt 261  Q
    ||||||||||| ||||||||||  | ||||||||||||||||||||||||||||||||| | ||||||||||||||||| | ||||||||||||||||||    
T  283100 ttttaaaatatcgttttgtcaattcggcaaaacacatgcattttttcattgttagatccccgcaaagagcaaaagtgaaggtattttaaataatagaggt 283001  T
Q  262 tgaataaaaacatttgaatgaaagtgaatgacatc 296  Q
    || ||||||||||||||||||||||||||||||||    
T  283000 tggataaaaacatttgaatgaaagtgaatgacatc 282966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 149 - 293
Target Start/End: Complemental strand, 13230572 - 13230428
Alignment:
Q  149 aaaatgtcacataattttaaaatattgttttgtcaacacagcaaaacacatgcattttttcattgttagatccaccaaagagcaaaagtgaaagaatttt 248  Q
    |||||||||||||||||||||||||   ||||||  | ||  ||| ||||||||||||||||||||||||||   |||| ||| |||||||| | |||||    
T  13230572 aaaatgtcacataattttaaaatatcactttgtctgctcaataaagcacatgcattttttcattgttagatctcacaaaaagcgaaagtgaatgtatttt 13230473  T
Q  249 aaataatagaggttgaataaaaacatttgaatgaaagtgaatgac 293  Q
    ||||||||||||||| ||||||||||||| || ||||||||||||    
T  13230472 aaataatagaggttggataaaaacatttgcataaaagtgaatgac 13230428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 356 - 406
Target Start/End: Complemental strand, 39975827 - 39975777
Alignment:
Q  356 cagttcatcatgatgtttggagttcttagagtgcctacaatgagtttgatc 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39975827 cagttcatcatgatgtttggagttcttagagtgcctacaatgagtttgatc 39975777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 406
Target Start/End: Complemental strand, 282906 - 282856
Alignment:
Q  356 cagttcatcatgatgtttggagttcttagagtgcctacaatgagtttgatc 406  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  282906 cagttcatcatgatgttcggagttcttagagtgcctacaatgattttgatc 282856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 22678725 - 22678794
Alignment:
Q  203 ttttttcattgttagat-ccaccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    |||||||||||| | || |||||||||| ||||| | || |||||| |||||||||||||||||||||||    
T  22678725 ttttttcattgtcacatgccaccaaagaccaaaattaaaggaatttaaaataatagaggttgaataaaaa 22678794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 39976230 - 39976189
Alignment:
Q  14 gaaattgtaaaaagaaagaatacaaaaaagtagtttgaaaat 55  Q
    ||||||||||||||||||||||| |||||||| |||||||||    
T  39976230 gaaattgtaaaaagaaagaatacgaaaaagtaatttgaaaat 39976189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 271
Target Start/End: Complemental strand, 6554917 - 6554843
Alignment:
Q  198 atgcattttttcattgttagatcc-accaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    |||||||||| ||||||||||| | |||||||| | |||||||| |||||| ||||||  || ||||||||||||    
T  6554917 atgcatttttccattgttagattctaccaaagacccaaagtgaaggaatttgaaataagggatgttgaataaaaa 6554843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 293
Target Start/End: Original strand, 13668627 - 13668689
Alignment:
Q  231 caaaagtgaaagaattttaaataatagaggttgaataaaaacatttgaatgaaagtgaatgac 293  Q
    |||||||||| | |||  |||||| |||||||| ||||||||||||| |||||| ||||||||    
T  13668627 caaaagtgaaggtattaaaaataacagaggttggataaaaacatttgcatgaaaatgaatgac 13668689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 293
Target Start/End: Original strand, 13681484 - 13681546
Alignment:
Q  231 caaaagtgaaagaattttaaataatagaggttgaataaaaacatttgaatgaaagtgaatgac 293  Q
    |||||||||| | |||  |||||| |||||||| ||||||||||||| |||||| ||||||||    
T  13681484 caaaagtgaaggtattaaaaataacagaggttggataaaaacatttgcatgaaaatgaatgac 13681546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 283306 - 283265
Alignment:
Q  14 gaaattgtaaaaagaaagaatacaaaaaagtagtttgaaaat 55  Q
    ||||||||||||||||||||||| || ||||| |||||||||    
T  283306 gaaattgtaaaaagaaagaatacgaataagtaatttgaaaat 283265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 17449726 - 17449674
Alignment:
Q  219 tccaccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    |||| |||||| ||||||||||  ||||| |||||||||| ||||||||||||    
T  17449726 tccatcaaagaccaaaagtgaagcaatttcaaataatagatgttgaataaaaa 17449674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 50163434 - 50163382
Alignment:
Q  219 tccaccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    ||||||||||| |||||| |||||| ||| ||| |||||| ||||||||||||    
T  50163434 tccaccaaagaccaaaagcgaaagattttgaaacaatagaagttgaataaaaa 50163382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 55051239 - 55051171
Alignment:
Q  204 tttttcattgttagatcc-accaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    |||| |||||| |||||| |||||||| ||||||| ||  ||||| |||||||||| ||||||||||||    
T  55051239 ttttccattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatagatgttgaataaaaa 55051171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 163; Significance: 6e-87; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 63 - 296
Target Start/End: Complemental strand, 36097375 - 36097143
Alignment:
Q  63 gagttattggaaattttatggtttagttgaaggagttaaaaatttatgagtagttatttcaccaacnnnnnnnnngactcaattgaaaaatgtcacataa 162  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||          |||||||||||||||||||||||||    
T  36097375 gagttattggtaattttatggtttagttgaaggagttaaaaatttatgagtagttatttcatcaa-aaaaaaaaagactcaattgaaaaatgtcacataa 36097277  T
Q  163 ttttaaaatattgttttgtcaacacagcaaaacacatgcattttttcattgttagatccaccaaagagcaaaagtgaaagaattttaaataatagaggtt 262  Q
    ||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||| |||||||    
T  36097276 ttttaaaatatcgttttgtcaactcggcaaaacacatgcattttttcattgttagatcccccaaagagtaaaagtgaaggaattttaaataacagaggtt 36097177  T
Q  263 gaataaaaacatttgaatgaaagtgaatgacatc 296  Q
    ||||||||||||||||||||||||||||||||||    
T  36097176 gaataaaaacatttgaatgaaagtgaatgacatc 36097143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 66 - 296
Target Start/End: Original strand, 12745342 - 12745582
Alignment:
Q  66 ttattggaaattttatggtttagttgaaggagttaaaaatttatgagtagttatttcaccaacnnnnnnnnn---------gactcaattgaaaaatgtc 156  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||                   |||||||||||||||| ||    
T  12745342 ttattggtaattttatggcttagttgaaggagttaaaaatttatgagtagttatttcacaaaaaaaaaaaaacaaaaaatagactcaattgaaaaatctc 12745441  T
Q  157 acataattttaaaatattgttttgtcaacacagcaaaacacatgcattttttcattgttagatccacc-aaagagcaaaagtgaaagaattttaaataat 255  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||  |||||| |||| ||||||| || |||||||||||| ||| | ||||||| ||||    
T  12745442 acataattttaaaatatcgttttgtcaactcagcaaaacacatgattttttttattgctagatccccctaaagagcaaaagggaaggtattttaagtaat 12745541  T
Q  256 agaggttgaataaaaacatttgaatgaaagtgaatgacatc 296  Q
    |||||||| |||||||||||| ||||||||||||| |||||    
T  12745542 agaggttggataaaaacatttcaatgaaagtgaataacatc 12745582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 177 - 296
Target Start/End: Original strand, 50331505 - 50331624
Alignment:
Q  177 tttgtcaacacagcaaaacacatgcattttttcattgttagatcc-accaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaacatt 275  Q
    ||||||||| |||||||| |||||||||||||||||||||||||| |||||| |||||||||||| | |||||| |||||||| |||| |||||||||||    
T  50331505 tttgtcaactcagcaaaa-acatgcattttttcattgttagatcccaccaaaaagcaaaagtgaaggtattttacataatagaagttggataaaaacatt 50331603  T
Q  276 tgaatgaaagtgaatgacatc 296  Q
    || |||||||| |||||||||    
T  50331604 tgcatgaaagtaaatgacatc 50331624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 356 - 406
Target Start/End: Complemental strand, 36097082 - 36097032
Alignment:
Q  356 cagttcatcatgatgtttggagttcttagagtgcctacaatgagtttgatc 406  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36097082 cagttcatcatgatgtttgaagttcttagagtgcctacaatgagtttgatc 36097032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 271
Target Start/End: Complemental strand, 2251335 - 2251237
Alignment:
Q  176 ttttgtcaacacagcaaaacacat--gcattttttcattgtta-gatccaccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    ||||||||||  ||||||||||||  |||||||| |||||| | | || |||||||| |||||||||| |||||| ||||||| |||||||||||||||    
T  2251335 ttttgtcaacttagcaaaacacatatgcatttttccattgtgaagttctaccaaagaccaaaagtgaaggaatttgaaataattgaggttgaataaaaa 2251237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 29196048 - 29195986
Alignment:
Q  159 ataattttaaaatattgttttgtcaacacagcaaaacacatgcattttttcattgttagatcc 221  Q
    ||||||||||||| ||  ||||||||| ||  |||||||||||||||||||||||||||||||    
T  29196048 ataattttaaaatgttcctttgtcaactcattaaaacacatgcattttttcattgttagatcc 29195986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 295
Target Start/End: Original strand, 10976150 - 10976274
Alignment:
Q  176 ttttgtcaacacagcaaaacacatg--cattttttcattgttagatcc-accaaagagcaaaagtgaaagaattttaaataata--gaggttgaataaaa 270  Q
    ||||||||||||| || |||||||   |||||||||||||| |||||| || ||| | |||||||||| |||||| |||| |||  ||||||||||||||    
T  10976150 ttttgtcaacacatcataacacatctacattttttcattgtaagatcccacgaaatatcaaaagtgaaggaatttgaaatgatatagaggttgaataaaa 10976249  T
Q  271 acatttgaatgaaagtgaatgacat 295  Q
    | || || ||||||| ||| |||||    
T  10976250 aaatctgcatgaaagcgaaggacat 10976274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 406
Target Start/End: Original strand, 12745642 - 12745692
Alignment:
Q  356 cagttcatcatgatgtttggagttcttagagtgcctacaatgagtttgatc 406  Q
    |||||||||||||||||  ||||||||| |||| |||||||||||||||||    
T  12745642 cagttcatcatgatgttccgagttcttacagtgtctacaatgagtttgatc 12745692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 36097491 - 36097450
Alignment:
Q  14 gaaattgtaaaaagaaagaatacaaaaaagtagtttgaaaat 55  Q
    ||||||||||||||||||||||| |||||||| |||||||||    
T  36097491 gaaattgtaaaaagaaagaatacgaaaaagtaatttgaaaat 36097450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 220 - 271
Target Start/End: Complemental strand, 52123 - 52072
Alignment:
Q  220 ccaccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    |||||||||| ||||| |||| |||||| ||||||| |||||||||||||||    
T  52123 ccaccaaagaccaaaattgaaggaatttaaaataatggaggttgaataaaaa 52072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 271
Target Start/End: Complemental strand, 39184520 - 39184422
Alignment:
Q  176 ttttgtcaacacagcaaaacaca--tgcattttttcattgtta-gatccaccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    ||||||||||  |||||||||||  ||||||||| || ||| | | || |||||||| ||||||| ||||||||| ||||||  |||||||||||||||    
T  39184520 ttttgtcaacttagcaaaacacaaatgcatttttccagtgtgaagttctaccaaagaccaaaagtaaaagaatttgaaataagggaggttgaataaaaa 39184422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 271
Target Start/End: Complemental strand, 40058132 - 40058034
Alignment:
Q  176 ttttgtcaacacagcaaaacacat--gcattttttcattgtta-gatccaccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    ||||||||||  ||||||||||||  |||||||| || ||| | | || |||||||| ||||||| ||||||||| ||||||  |||||||||||||||    
T  40058132 ttttgtcaacttagcaaaacacatatgcatttttccactgtgaagttctaccaaagaccaaaagtaaaagaatttgaaataagggaggttgaataaaaa 40058034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 12745234 - 12745275
Alignment:
Q  15 aaattgtaaaaagaaagaatacaaaaaagtagtttgaaaata 56  Q
    ||||||| |||||||||||||| |||||||| ||||||||||    
T  12745234 aaattgtgaaaagaaagaatacgaaaaagtaatttgaaaata 12745275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 271
Target Start/End: Complemental strand, 14233142 - 14233093
Alignment:
Q  222 accaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    |||||||| |||||||||| |||||| ||||||  |||||||||||||||    
T  14233142 accaaagaccaaaagtgaaggaatttgaaataagcgaggttgaataaaaa 14233093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 40415898 - 40415830
Alignment:
Q  204 tttttcattgttagatc-caccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    ||||||||||||  ||| |||||||||||||| || ||||||||| ||||| |||||| ||| ||||||    
T  40415898 tttttcattgttgcatctcaccaaagagcaaatgttaaagaatttaaaatagtagaggctgattaaaaa 40415830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 406
Target Start/End: Original strand, 50331695 - 50331739
Alignment:
Q  362 atcatgatgtttggagttcttagagtgcctacaatgagtttgatc 406  Q
    |||||||||||  ||||||||||||||||||||||  ||||||||    
T  50331695 atcatgatgttcagagttcttagagtgcctacaataggtttgatc 50331739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 63 - 296
Target Start/End: Original strand, 33012732 - 33012965
Alignment:
Q  63 gagttattggaaattttatggtttagttgaaggagttaaaaatttatgagtagttatttcaccaacnnnnnnnnngactcaattgaaaaatgtcacataa 162  Q
    |||||||| | | ||||||||||||||||||||||||||||||||| |||||||||||||||||||         |||||||||||||||||||||||||    
T  33012732 gagttattagtagttttatggtttagttgaaggagttaaaaatttacgagtagttatttcaccaacaaaaaaaa-gactcaattgaaaaatgtcacataa 33012830  T
Q  163 ttttaaaatattgttttgtcaacacagcaaaacacatgcattttttcattgttagatccac-caaagagcaaaagtgaaagaattttaaataatagaggt 261  Q
    ||||||||||| ||||||||||  | ||||||||||||||||||||||||||||||||| | ||||||||||||||||| | ||||||||||||||||||    
T  33012831 ttttaaaatatcgttttgtcaattcggcaaaacacatgcattttttcattgttagatccccgcaaagagcaaaagtgaaggtattttaaataatagaggt 33012930  T
Q  262 tgaataaaaacatttgaatgaaagtgaatgacatc 296  Q
    || ||||||||||||||||||||||||||||||||    
T  33012931 tggataaaaacatttgaatgaaagtgaatgacatc 33012965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 177 - 296
Target Start/End: Original strand, 38012572 - 38012692
Alignment:
Q  177 tttgtcaacacagcaaaacacatgcattttttcattgttagatcc-accaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaacatt 275  Q
    ||||||||| || |||||||||||||||||| ||||||||| ||| |||||| |||||||||||| | |||||||||||||||||||  ||||||| |||    
T  38012572 tttgtcaactcatcaaaacacatgcatttttccattgttagttcccaccaaaaagcaaaagtgaatgtattttaaataatagaggttcgataaaaatatt 38012671  T
Q  276 tgaatgaaagtgaatgacatc 296  Q
    |||||||||||||||||||||    
T  38012672 tgaatgaaagtgaatgacatc 38012692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 406
Target Start/End: Original strand, 33013028 - 33013075
Alignment:
Q  359 ttcatcatgatgtttggagttcttagagtgcctacaatgagtttgatc 406  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||    
T  33013028 ttcatcgtgatgttcggagttcttagagtgcctacaatgagtttgatc 33013075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 271
Target Start/End: Complemental strand, 9025352 - 9025255
Alignment:
Q  176 ttttgtcaacacagcaaaacacat--gcattttttcattgttagatccaccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    |||||||||| ||| | |||||||  |||||||| ||||||||||| |  |||||| | |||||||| |||||| ||||||  |||||||||||||||    
T  9025352 ttttgtcaactcagtagaacacatatgcatttttccattgttagattctacaaagatccaaagtgaaggaatttgaaataagggaggttgaataaaaa 9025255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 271
Target Start/End: Original strand, 23570311 - 23570409
Alignment:
Q  176 ttttgtcaacacagcaaaacacat--gcattttttcattgttagatcc-accaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    ||||||||||  ||||||||||||  |||||||| |||||| || | | |||||||| ||||| |||| |||||| ||||||  |||||||||||||||    
T  23570311 ttttgtcaacttagcaaaacacatatgcatttttccattgtgaggttctaccaaagaccaaaattgaaggaatttgaaataagtgaggttgaataaaaa 23570409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 124
Target Start/End: Complemental strand, 9049102 - 9049041
Alignment:
Q  63 gagttattggaaattttatggtttagttgaaggagttaaaaatttatgagtagttatttcac 124  Q
    |||||| ||| ||| |||||  ||||||||| |||||| ||||||||||||| |||||||||    
T  9049102 gagttagtggtaatattatgtgttagttgaatgagttagaaatttatgagtaattatttcac 9049041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 33012625 - 33012666
Alignment:
Q  14 gaaattgtaaaaagaaagaatacaaaaaagtagtttgaaaat 55  Q
    ||||||||||||||||||||||| || ||||| |||||||||    
T  33012625 gaaattgtaaaaagaaagaatacgaataagtaatttgaaaat 33012666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 4063354 - 4063286
Alignment:
Q  204 tttttcattgttagatcc-accaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    |||| |||||| |||||| |||||||| ||||||| ||  ||||| |||||||||| ||||||||||||    
T  4063354 ttttccattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatagatgttgaataaaaa 4063286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 9012423 - 9012498
Alignment:
Q  220 ccaccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaacatttgaatgaaagtgaatgacatc 296  Q
    |||||||||| |||||||| | |||||| ||||||||||||| || |||||| | ||| ||||||  ||||||||||    
T  9012423 ccaccaaagatcaaaagtggaggaatttgaaataatagaggtagactaaaaa-aattgcatgaaaaagaatgacatc 9012498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 139 - 296
Target Start/End: Original strand, 49098 - 49256
Alignment:
Q  139 actcaattgaaaaatgtcacataattttaaaatattgttttgtcaacacagcaaaacacatgcattttttcattgttagat-ccaccaaagagcaaaagt 237  Q
    |||||||  |||||| ||||||||||||||||| | | | ||||||| |||||||||||||||| |||||||||||||||| |||||||| |||||||||    
T  49098 actcaataaaaaaatatcacataattttaaaatgtcgctatgtcaactcagcaaaacacatgcactttttcattgttagattccaccaaaaagcaaaagt 49197  T
Q  238 gaaagaattttaaataatagaggttgaataaaaacatttgaatgaaagtgaatgacatc 296  Q
    ||| | |||||||||||||||| |||  |||||| ||||| ||||||||||||||||||    
T  49198 gaatgtattttaaataatagagtttgggtaaaaatatttgcatgaaagtgaatgacatc 49256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 405
Target Start/End: Original strand, 49319 - 49365
Alignment:
Q  359 ttcatcatgatgtttggagttcttagagtgcctacaatgagtttgat 405  Q
    |||||||||||| | || ||||||||||||||||||||| |||||||    
T  49319 ttcatcatgatgctcggggttcttagagtgcctacaatgggtttgat 49365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 296
Target Start/End: Original strand, 49930 - 50024
Alignment:
Q  201 cattttttcattgttagatcc-accaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaacatttgaatgaaagtgaatgacatc 296  Q
    |||||||||||||| | |||  || ||||| |||||||||| |||||| ||||||| |||||||||| ||||   |||  |||||||||||||||||    
T  49930 cattttttcattgtcaaatcggacaaaagaccaaaagtgaaggaatttaaaataattgaggttgaatcaaaaa--ttgcttgaaagtgaatgacatc 50024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 8e-34; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 139 - 295
Target Start/End: Original strand, 41753637 - 41753793
Alignment:
Q  139 actcaattgaaaaatgtcacataattttaaaatattgttttgtcaacacagcaaaacacatgcattttttcattgttagatcc-accaaagagcaaaagt 237  Q
    |||||||  ||||||| ||||| |||||||| | | | ||||||||| |||||||| |||||||||||||||||||||||||| |||||| |||||||||    
T  41753637 actcaataaaaaaatgacacatgattttaaagtgtcgctttgtcaactcagcaaaa-acatgcattttttcattgttagatcccaccaaaaagcaaaagt 41753735  T
Q  238 gaaagaattttaaataatagaggttgaataaaaacatttgaatgaaagtgaatgacat 295  Q
    ||| | |||||| |||||| |||||| ||||||||||||| |||||||| ||||||||    
T  41753736 gaaggtattttacataataaaggttggataaaaacatttgcatgaaagtaaatgacat 41753793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 155 - 293
Target Start/End: Original strand, 5787763 - 5787901
Alignment:
Q  155 tcacataattttaaaatattgttttgtcaacacagcaaaacacatgcattttttcattgttagatc-caccaaagagcaaaagtgaaagaattttaaata 253  Q
    |||||||| |||||||| | |||| |||||| |   |||||||||||||||||||||||||| ||| ||||||| ||| |||||||| | ||||||| ||    
T  5787763 tcacataaatttaaaatgtcgtttcgtcaactccttaaaacacatgcattttttcattgttatatctcaccaaaaagcgaaagtgaatgtattttaa-ta 5787861  T
Q  254 atagaggttgaataaaaacatttgaatgaaagtgaatgac 293  Q
    |||||||||| |||||| |||||| |||||||||||||||    
T  5787862 atagaggttggataaaatcatttgcatgaaagtgaatgac 5787901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 271
Target Start/End: Complemental strand, 6911652 - 6911581
Alignment:
Q  201 cattttttcattgttagat-ccaccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    |||||||||||||| | || |||||||||| ||||| ||||  ||||| |||||||||||||||||||||||    
T  6911652 cattttttcattgtcacatgccaccaaagatcaaaattgaagaaatttaaaataatagaggttgaataaaaa 6911581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 296
Target Start/End: Original strand, 17680629 - 17680718
Alignment:
Q  210 attgttaga-tccaccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa--catttgaatgaaagtgaatgacatc 296  Q
    ||||||||| ||||| ||||| |||||||||| |||||| |||||||| || |||||||||||   || || ||||||||||||||||||    
T  17680629 attgttagagtccacaaaagatcaaaagtgaatgaatttgaaataatatagattgaataaaaaataatatgcatgaaagtgaatgacatc 17680718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 271
Target Start/End: Original strand, 31965530 - 31965626
Alignment:
Q  176 ttttgtcaacacagcaaaacacatgcattttttcattgttagatcc-accaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    |||||||||| ||| | |||| |||||||||| || |||||||| | || ||||| | |||||||| |||||| ||||||  |||||||||||||||    
T  31965530 ttttgtcaactcagtagaacatatgcatttttccactgttagattctacaaaagacccaaagtgaaggaatttgaaataagggaggttgaataaaaa 31965626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 220 - 271
Target Start/End: Complemental strand, 20444446 - 20444395
Alignment:
Q  220 ccaccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    |||||||||| ||||| |||| |||||| ||||||| |||||||||||||||    
T  20444446 ccaccaaagatcaaaattgaatgaatttgaaataatggaggttgaataaaaa 20444395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 270
Target Start/End: Original strand, 36726634 - 36726673
Alignment:
Q  231 caaaagtgaaagaattttaaataatagaggttgaataaaa 270  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  36726634 caaaagtgaaagaatttgaaataatagaggctgaataaaa 36726673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 6467586 - 6467534
Alignment:
Q  64 agttattggaaattttatggtttagttgaaggagttaaaaatttatgagtagt 116  Q
    ||||||||| |||||||||| |||||||||||||||  |  ||||||||||||    
T  6467586 agttattggtaattttatgggttagttgaaggagttggatttttatgagtagt 6467534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 406
Target Start/End: Original strand, 41753879 - 41753923
Alignment:
Q  362 atcatgatgtttggagttcttagagtgcctacaatgagtttgatc 406  Q
    |||||||||||  ||||||||||||||||||||||  ||||||||    
T  41753879 atcatgatgttcagagttcttagagtgcctacaataggtttgatc 41753923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 45659489 - 45659441
Alignment:
Q  220 ccaccaaagagcaaaagtgaaagaattttaaataatagaggttgaataa 268  Q
    |||||||||| |||||||||| | |||| ||||||||||||||| ||||    
T  45659489 ccaccaaagaccaaaagtgaaggtatttgaaataatagaggttggataa 45659441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 139 - 295
Target Start/End: Complemental strand, 12978242 - 12978086
Alignment:
Q  139 actcaattgaaaaatgtcacataattttaaaatattgttttgtcaacacagcaaaacacatgcattttttcattgttagatcc-accaaagagcaaaagt 237  Q
    |||||||  ||||||| ||||| |||||||| | | | ||||||||| |||||||| ||| |||||||||||||||||||||| |||||| | |||||||    
T  12978242 actcaataaaaaaatgacacatgattttaaagtgtcgctttgtcaactcagcaaaa-acacgcattttttcattgttagatcccaccaaaaaacaaaagt 12978144  T
Q  238 gaaagaattttaaataatagaggttgaataaaaacatttgaatgaaagtgaatgacat 295  Q
    |||   |||||| |||||| |||||| |||||||||||||||||||||| ||||||||    
T  12978143 gaagatattttatataataaaggttggataaaaacatttgaatgaaagtaaatgacat 12978086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 296
Target Start/End: Complemental strand, 24708787 - 24708712
Alignment:
Q  221 caccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaacatttgaatgaaagtgaatgacatc 296  Q
    ||||||| | |||||||||| ||| ||||||||| |||||||||||||||| |     ||||||||||||||||||    
T  24708787 caccaaatatcaaaagtgaaggaaatttaaataacagaggttgaataaaaaaaccatcatgaaagtgaatgacatc 24708712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 96
Target Start/End: Complemental strand, 12978305 - 12978272
Alignment:
Q  63 gagttattggaaattttatggtttagttgaagga 96  Q
    |||||||||| |||||||||||||||||||||||    
T  12978305 gagttattggtaattttatggtttagttgaagga 12978272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 29865734 - 29865774
Alignment:
Q  231 caaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    ||||| |||| ||||||||||||||||||||||||| ||||    
T  29865734 caaaactgaatgaattttaaataatagaggttgaatgaaaa 29865774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 148 - 296
Target Start/End: Complemental strand, 1600285 - 1600137
Alignment:
Q  148 aaaaatgtcacataattttaaaatattgttttgtcaacacagcaaaacacatgcattttttcattgttagatcc-accaaagagcaaaagtgaaagaatt 246  Q
    ||||||| ||||| |||||||| | | | ||||||||| |||||||| ||||||||||||| ||||| |||||| |||||| |||||||||||| | |||    
T  1600285 aaaaatgacacatgattttaaagtgtcgctttgtcaactcagcaaaa-acatgcattttttaattgtgagatcccaccaaaaagcaaaagtgaaggtatt 1600187  T
Q  247 ttaaataatagaggttgaataaaaacatttgaatgaaagtgaatgacatc 296  Q
    ||| ||||||||||||| |||||||||||||  ||||||| |||||||||    
T  1600186 ttacataatagaggttggataaaaacatttgcgtgaaagtaaatgacatc 1600137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 139 - 295
Target Start/End: Complemental strand, 4851070 - 4850914
Alignment:
Q  139 actcaattgaaaaatgtcacataattttaaaatattgttttgtcaacacagcaaaacacatgcattttttcattgttagatcc-accaaagagcaaaagt 237  Q
    |||||||  ||||||| ||||  |||||||| | | ||||||||||  || ||||| |||||||||||||||||||||||||| |||||| |||||||||    
T  4851070 actcaataaaaaaatgacacacgattttaaagtgtcgttttgtcaaatcaacaaaa-acatgcattttttcattgttagatcccaccaaaaagcaaaagt 4850972  T
Q  238 gaaagaattttaaataatagaggttgaataaaaacatttgaatgaaagtgaatgacat 295  Q
     || | |||||| |||||| |||||| |||||||||||||||||||||| ||||||||    
T  4850971 aaaggtattttatataataaaggttggataaaaacatttgaatgaaagtaaatgacat 4850914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 271
Target Start/End: Complemental strand, 16707687 - 16707636
Alignment:
Q  220 ccaccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||| ||||    
T  16707687 ccaccaaagaccaaaagtgaaagaatttgaaataatagaggttgaatgaaaa 16707636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 270
Target Start/End: Original strand, 4789983 - 4790063
Alignment:
Q  191 aaaacacatgcattttttcattgttagatcca-ccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaa 270  Q
    |||||||||||| ||||||||||| | ||||| ||||| | |||||||||| |||||| |||| ||||| |||||||||||    
T  4789983 aaaacacatgcaatttttcattgtcaaatccaaccaaaaatcaaaagtgaatgaatttgaaatgatagatgttgaataaaa 4790063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 296
Target Start/End: Complemental strand, 10191483 - 10191396
Alignment:
Q  210 attgttaga-tccaccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaacatttgaatgaaagtgaatgacatc 296  Q
    ||||||||| ||||| ||||| |||||||||| |||||| |||||||| || |||||||||||    || ||||||||||||||||||    
T  10191483 attgttagagtccacaaaagatcaaaagtgaatgaatttgaaataatatagattgaataaaaaataatgcatgaaagtgaatgacatc 10191396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 271
Target Start/End: Complemental strand, 21986628 - 21986532
Alignment:
Q  176 ttttgtcaacacagcaaaacacatgcattttttcattgtta-gatccaccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    ||||||||||  || |||||||||| |||||| |||||| | | || |||||||| |||||||||| |||||| ||||||   ||||||||||||||    
T  21986628 ttttgtcaacttagtaaaacacatgtatttttccattgtgaagttctaccaaagaccaaaagtgaaggaatttgaaataagttaggttgaataaaaa 21986532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 98
Target Start/End: Complemental strand, 1600355 - 1600320
Alignment:
Q  63 gagttattggaaattttatggtttagttgaaggagt 98  Q
    |||||||||| |||||||||||||||||||||||||    
T  1600355 gagttattggtaattttatggtttagttgaaggagt 1600320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 220 - 271
Target Start/End: Complemental strand, 16705967 - 16705916
Alignment:
Q  220 ccaccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    |||||||||| ||||||||||||||||| |||||  ||||||||||| ||||    
T  16705967 ccaccaaagaccaaaagtgaaagaatttcaaatagcagaggttgaatgaaaa 16705916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 201 - 267
Target Start/End: Original strand, 29213987 - 29214054
Alignment:
Q  201 cattttttcattgttagatcc-accaaagagcaaaagtgaaagaattttaaataatagaggttgaata 267  Q
    |||||||||||||| || ||| |||||||| ||||||||||  ||||| ||||||| |||||||||||    
T  29213987 cattttttcattgtcaggtcccaccaaagaccaaaagtgaagaaatttgaaataattgaggttgaata 29214054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 285
Target Start/End: Original strand, 15618178 - 15618232
Alignment:
Q  231 caaaagtgaaagaattttaaataatagaggttgaataaaaacatttgaatgaaag 285  Q
    |||||||||| | | || ||||||||||||||||||||||| ||||| |||||||    
T  15618178 caaaagtgaatgcacttgaaataatagaggttgaataaaaatatttgcatgaaag 15618232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 271
Target Start/End: Complemental strand, 26895238 - 26895189
Alignment:
Q  222 accaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    |||||||| ||||| |||| |||| | |||||||||||||||||||||||    
T  26895238 accaaagaccaaaactgaaggaatataaaataatagaggttgaataaaaa 26895189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 406
Target Start/End: Complemental strand, 1600050 - 1600006
Alignment:
Q  362 atcatgatgtttggagttcttagagtgcctacaatgagtttgatc 406  Q
    |||||||||||  ||||||||||||||||||||||  ||||||||    
T  1600050 atcatgatgttaagagttcttagagtgcctacaataggtttgatc 1600006  T

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Target: scaffold0159 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 155 - 293
Target Start/End: Original strand, 32136 - 32274
Alignment:
Q  155 tcacataattttaaaatattgttttgtcaacacagcaaaacacatgcattttttcattgttagatc-caccaaagagcaaaagtgaaagaattttaaata 253  Q
    |||||||| |||||||| | |||| |||||| |   |||||||||||||||||||||||||| ||| ||||||| ||| |||||||| | ||||||| ||    
T  32136 tcacataaatttaaaatgtcgtttcgtcaactccttaaaacacatgcattttttcattgttatatctcaccaaaaagcgaaagtgaatgtattttaa-ta 32234  T
Q  254 atagaggttgaataaaaacatttgaatgaaagtgaatgac 293  Q
    |||||||||| |||||| |||||| |||||||||||||||    
T  32235 atagaggttggataaaatcatttgcatgaaagtgaatgac 32274  T

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Target: scaffold0380 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 177 - 284
Target Start/End: Complemental strand, 15660 - 15550
Alignment:
Q  177 tttgtcaacacagcaaaacac--atgcattttttcattgttaga-tccaccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaaca 273  Q
    ||||||||| |||||||||||  ||   |||||||||||||||| ||||||||| ||||||||| || |  |||||||||||||||||||||||||||||    
T  15660 tttgtcaactcagcaaaacacatattttttttttcattgttagattccaccaaaaagcaaaagtcaaggtgttttaaataatagaggttgaataaaaaca 15561  T
Q  274 tttgaatgaaa 284  Q
    |||| ||||||    
T  15560 tttgcatgaaa 15550  T

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Target: scaffold0380; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 269
Target Start/End: Complemental strand, 14879 - 14808
Alignment:
Q  199 tgcattttttcattgttagatcc-accaaagagcaaaagtgaaagaattttaaataatagaggttgaataaa 269  Q
    |||||||||||||||| | |||  |||||||| |||||||||| |||||| |||||||||||||||||||||    
T  14879 tgcattttttcattgtcaaatcagaccaaagaccaaaagtgaaggaatttaaaataatagaggttgaataaa 14808  T

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Target: scaffold0380; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 362 - 406
Target Start/End: Complemental strand, 15474 - 15430
Alignment:
Q  362 atcatgatgtttggagttcttagagtgcctacaatgagtttgatc 406  Q
    ||||||||||| |||| ||||||||||||||||||| ||||||||    
T  15474 atcatgatgttcggaggtcttagagtgcctacaatgggtttgatc 15430  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 43386142 - 43386251
Alignment:
Q  149 aaaatgtcacataattttaaaatattgttttgtcaacacagcaaaacacatgca-ttttttcattgttagatccaccaaagagcaaaagtgaaagaattt 247  Q
    |||||||||||||||||||||||||   ||| ||| | |||||||||||||||| ||||||||| ||||||||   |||| |||  ||||||| | ||||    
T  43386142 aaaatgtcacataattttaaaatatcactttatcagctcagcaaaacacatgcatttttttcatcgttagatctcacaaaaagcggaagtgaatgtattt 43386241  T
Q  248 taaataatag 257  Q
    ||||||||||    
T  43386242 taaataatag 43386251  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 268
Target Start/End: Complemental strand, 31420995 - 31420928
Alignment:
Q  201 cattttttcattgttagatccaccaaagagcaaaagtgaaagaattttaaataatagaggttgaataa 268  Q
    ||||||| |||||||||||||| | || | ||||||||||||||||| ||||||||| ||||||||||    
T  31420995 catttttacattgttagatccatcgaataccaaaagtgaaagaatttaaaataatagcggttgaataa 31420928  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 271
Target Start/End: Original strand, 21467415 - 21467513
Alignment:
Q  176 ttttgtcaacacagcaaaacacat--gcattttttcattgtta-gatccaccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    ||||||||||  ||||||||||||  |||||||| |||||| | | || |||||||| |||||||||| |||||| ||||||  |||||||||||||||    
T  21467415 ttttgtcaacttagcaaaacacatatgcatttttccattgtgaagttctaccaaagaccaaaagtgaaggaatttgaaataagtgaggttgaataaaaa 21467513  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 271
Target Start/End: Original strand, 19102446 - 19102544
Alignment:
Q  176 ttttgtcaacacagcaaaacacat--gcattttttcattgtta-gatccaccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    ||||||||||  ||||||||||||  |||||||| |||||| | | || |||||||| |||||||||| |||||| ||| ||  |||||||||||||||    
T  19102446 ttttgtcaacttagcaaaacacatatgcatttttacattgtgaagttctaccaaagaccaaaagtgaaggaatttgaaacaagtgaggttgaataaaaa 19102544  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 271
Target Start/End: Complemental strand, 49882202 - 49882104
Alignment:
Q  176 ttttgtcaacacagcaaaacacat--gcattttttcattgttagatcc-accaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    |||||||||| ||| | |||||||  |||||||| | ||||||||| | || ||||| | |||||||| |||||| |||||| ||||||||||||||||    
T  49882202 ttttgtcaactcagtagaacacatatgcatttttcctttgttagattctacaaaagatccaaagtgaaggaatttgaaataagagaggttgaataaaaa 49882104  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 271
Target Start/End: Complemental strand, 15530509 - 15530435
Alignment:
Q  198 atgcattttttcattgtta-gatccaccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    ||||||||||||||||| | | || |||||||| |||||||||| ||| || ||||||  |||||||||||||||    
T  15530509 atgcattttttcattgtgaagttctaccaaagatcaaaagtgaaggaagttgaaataagcgaggttgaataaaaa 15530435  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 271
Target Start/End: Original strand, 31090044 - 31090094
Alignment:
Q  221 caccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    ||||||| | |||||||||| |||||| |||||| ||||||||||||||||    
T  31090044 caccaaatatcaaaagtgaatgaatttgaaataacagaggttgaataaaaa 31090094  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 271
Target Start/End: Original strand, 17001910 - 17001978
Alignment:
Q  204 tttttcattgttagatcc-accaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    |||| |||||| |||||| |||||||| ||||||| ||  ||||| |||||||||| ||||||||||||    
T  17001910 ttttccattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatagatgttgaataaaaa 17001978  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 34161341 - 34161273
Alignment:
Q  204 tttttcattgttagatcc-accaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    |||| |||||| |||||| |||||||| ||||||| ||  ||||| |||||||||| ||||||||||||    
T  34161341 ttttccattgtcagatcccaccaaagatcaaaagttaagtaatttaaaataatagatgttgaataaaaa 34161273  T

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Target: scaffold0284 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 271
Target Start/End: Original strand, 515 - 613
Alignment:
Q  176 ttttgtcaacacagcaaaacacat--gcattttttcattgttagatcc-accaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    |||||||||| ||| | |||||||  |||||||||||||||||||| | || ||||| | |||||||| |||||| ||||||  |||||||||||||||    
T  515 ttttgtcaactcagtagaacacatatgcattttttcattgttagattctacaaaagacccaaagtgaaggaatttgaaataagggaggttgaataaaaa 613  T

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Target: scaffold0021 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 271
Target Start/End: Original strand, 128768 - 128839
Alignment:
Q  201 cattttttcattgttagat-ccaccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    |||||||||||||| |||| |||| ||| | |||||||||| |||||| |||| ||||||||||||||||||    
T  128768 cattttttcattgtaagattccacaaaatatcaaaagtgaaggaatttgaaatgatagaggttgaataaaaa 128839  T

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Target: scaffold0051 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 17677 - 17625
Alignment:
Q  219 tccaccaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    ||||||||||| ||||||||||  ||||| |||||||||| ||||||||||||    
T  17677 tccaccaaagaccaaaagtgaagtaatttaaaataatagatgttgaataaaaa 17625  T

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Target: scaffold0211 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 271
Target Start/End: Original strand, 18161 - 18235
Alignment:
Q  198 atgcattttttcattgttagatcc-accaaagagcaaaagtgaaagaattttaaataatagaggttgaataaaaa 271  Q
    |||||||||| ||||||||||| | || ||||| | |||||||| |||||| ||||||  |||||||||||||||    
T  18161 atgcatttttccattgttagattctacaaaagacccaaagtgaaggaatttgaaataagggaggttgaataaaaa 18235  T

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Target: scaffold0061 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 296
Target Start/End: Original strand, 43518 - 43571
Alignment:
Q  242 gaattttaaataatagaggttgaataaaaacatttgaatgaaagtgaatgacatc 296  Q
    |||||||||| ||||||||||||||||||| | ||| |||||||| |||||||||    
T  43518 gaattttaaacaatagaggttgaataaaaa-aattgcatgaaagttaatgacatc 43571  T

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Target: scaffold0017 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 296
Target Start/End: Complemental strand, 155268 - 155215
Alignment:
Q  242 gaattttaaataatagaggttgaataaaaacatttgaatgaaagtgaatgacatc 296  Q
    |||||||||| ||||||||||||||||||| | ||| |||||||| |||||||||    
T  155268 gaattttaaacaatagaggttgaataaaaa-aattgcatgaaagttaatgacatc 155215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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