View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_low_23 (Length: 421)
Name: NF20570_low_23
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 64 - 405
Target Start/End: Complemental strand, 54850489 - 54850148
Alignment:
| Q |
64 |
acagtttgtgtaataggttcaaaaactaaatcaatcaaaccaagagtgaatgaggtgactgcacctttcccacatacctttattaagatcatggtgatat |
163 |
Q |
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| T |
54850489 |
acagtttgcgtaataggttcaaaaactaaatcaatcaaaccaagagtgaatgaggtgactgcacctttcccacatacctttattaagatcatggtgatat |
54850390 |
T |
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| Q |
164 |
ggaattggtgtagagccactgatgaatgcgagtttgtctttggcgcttaaaacatgttgcatataacgactccatgtgagataattggttccgttgagct |
263 |
Q |
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| T |
54850389 |
ggaattggtgtagagccactgatgaatgcgagtttgtctttggcgcttaaaacatgttgcatataacgactccatgtgagataattggttccgttgagct |
54850290 |
T |
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| Q |
264 |
tatgagaagttgtagctgaattaggtccttcgcttggatgtacaaaaaagatggaatctgattgttgttgatgaacatgaatacgttgttgaaaatcaag |
363 |
Q |
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| T |
54850289 |
tatgggaagttgtagctgaattaggtacttcgtttggatgtacaaaaaagatggaatctgattgttgttgatgaacatgaatacgttgttgaaaatcaag |
54850190 |
T |
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| Q |
364 |
accaagaaatatgagaaattggtgaagataacgaggcaatca |
405 |
Q |
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| T |
54850189 |
agcaagaaatatgagaaattggtgaagataacgaggcaatca |
54850148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 54850514 - 54850562
Alignment:
| Q |
19 |
tgtttgggaagattttaaggagcatttttctgaagctgatagaatacag |
67 |
Q |
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| T |
54850514 |
tgtttgggaagattttaaggagcatttttctgaagctgatagaatacag |
54850562 |
T |
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