View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20570_low_3 (Length: 589)

Name: NF20570_low_3
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20570_low_3
NF20570_low_3
[»] chr3 (5 HSPs)
chr3 (16-589)||(21729777-21730348)
chr3 (184-276)||(52532694-52532786)
chr3 (178-274)||(1755876-1755972)
chr3 (176-253)||(55121208-55121285)
chr3 (203-274)||(9502885-9502956)
[»] chr1 (19 HSPs)
chr1 (223-273)||(27545396-27545446)
chr1 (199-278)||(36141726-36141804)
chr1 (176-274)||(457602-457699)
chr1 (176-274)||(30412610-30412707)
chr1 (195-276)||(36141685-36141766)
chr1 (223-275)||(52112888-52112940)
chr1 (199-274)||(21945071-21945146)
chr1 (223-294)||(47911925-47911996)
chr1 (237-275)||(5431353-5431391)
chr1 (176-274)||(47911863-47911960)
chr1 (201-274)||(50155356-50155429)
chr1 (159-248)||(50308640-50308729)
chr1 (243-275)||(1409061-1409093)
chr1 (223-275)||(10256793-10256845)
chr1 (199-279)||(11864670-11864750)
chr1 (227-271)||(24198756-24198800)
chr1 (159-275)||(28038839-28038955)
chr1 (223-275)||(34597532-34597584)
chr1 (223-275)||(52923335-52923387)
[»] chr8 (8 HSPs)
chr8 (159-275)||(24820310-24820425)
chr8 (225-279)||(38414304-38414358)
chr8 (223-275)||(2627186-2627238)
chr8 (159-275)||(11335579-11335695)
chr8 (179-279)||(42786376-42786475)
chr8 (228-274)||(24418961-24419007)
chr8 (159-275)||(6197838-6197954)
chr8 (227-279)||(9793444-9793496)
[»] chr5 (13 HSPs)
chr5 (185-276)||(11607324-11607415)
chr5 (159-274)||(1100070-1100185)
chr5 (228-275)||(18261612-18261659)
chr5 (225-275)||(892563-892613)
chr5 (199-249)||(37321302-37321352)
chr5 (159-275)||(1098640-1098755)
chr5 (195-275)||(29486510-29486590)
chr5 (159-276)||(892563-892680)
chr5 (226-275)||(13654587-13654636)
chr5 (159-275)||(1098640-1098755)
chr5 (173-209)||(1138248-1138284)
chr5 (223-275)||(13391543-13391595)
chr5 (243-275)||(40515277-40515309)
[»] chr4 (16 HSPs)
chr4 (184-275)||(2401052-2401143)
chr4 (178-279)||(134527-134628)
chr4 (159-275)||(11796597-11796712)
chr4 (237-275)||(22020128-22020166)
chr4 (178-275)||(37255713-37255809)
chr4 (223-275)||(5535789-5535841)
chr4 (195-275)||(22235308-22235388)
chr4 (159-270)||(4386335-4386445)
chr4 (200-278)||(32738069-32738148)
chr4 (223-274)||(35005131-35005182)
chr4 (173-292)||(53225674-53225793)
chr4 (228-273)||(13689617-13689662)
chr4 (223-275)||(19934650-19934702)
chr4 (222-258)||(33508607-33508643)
chr4 (219-279)||(46462388-46462448)
chr4 (223-275)||(54164825-54164877)
[»] chr7 (14 HSPs)
chr7 (228-292)||(34840609-34840673)
chr7 (178-274)||(48872972-48873068)
chr7 (173-292)||(41850595-41850714)
chr7 (176-274)||(35274442-35274539)
chr7 (219-258)||(7097163-7097202)
chr7 (228-275)||(8169177-8169224)
chr7 (228-275)||(11602848-11602895)
chr7 (243-296)||(13807237-13807290)
chr7 (159-275)||(8169109-8169224)
chr7 (215-275)||(9555328-9555388)
chr7 (179-275)||(10095731-10095827)
chr7 (227-275)||(26982776-26982824)
chr7 (201-273)||(29365679-29365751)
chr7 (178-258)||(48634206-48634285)
[»] chr2 (7 HSPs)
chr2 (176-274)||(28248966-28249064)
chr2 (176-274)||(41153144-41153242)
chr2 (149-253)||(25636920-25637024)
chr2 (229-279)||(5528168-5528218)
chr2 (228-273)||(44274622-44274667)
chr2 (159-275)||(15119789-15119905)
chr2 (219-275)||(41824273-41824329)
[»] scaffold0020 (1 HSPs)
scaffold0020 (202-275)||(133656-133729)
[»] chr6 (1 HSPs)
chr6 (199-272)||(27159122-27159195)


Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 16 - 589
Target Start/End: Complemental strand, 21730348 - 21729777
Alignment:
Q  16 cacttggaatcaaccctacaaaagctctggccttgcctaaaaaatgtggtagaaacacaccagctggatgtagaggtaaccttgaatagacattgataca 115  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| | |||||||||    
T  21730348 cacttggaatcaaccctacaaaagctttggccttgcctaaaaaatgtggtagaaaaacaccacctggatgtagaggtaaccttgaatataaattgataca 21730249  T
Q  116 aatattgctttaatattcatattttgtattccctccgactttaattatgagcaaaa-ctttacttttttgatttattcattaattaatgtatttgatctg 214  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||    
T  21730248 aatattgctttaatattcatattttgtactccctccga-tttaattatgagcaaaaactttactttttagatttattcattaattaatgtatttggtctg 21730150  T
Q  215 tatcataaaccaaatacattagttattgaatgaatctaa-caagtgaacttttgcttataattaaggcaggagggagtagtatactgtttggtgactcan 313  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||     
T  21730149 tatcataaaccaaatatattagttattgaatgaatctaaacaagtgaacttttgctcaaaattaaggcatgagggagtagtatactgtttggtgactcat 21730050  T
Q  314 nnnnnnnnnnnnnnnncgcagcgaattgaagaaattctcgagaagcatttgcttttgaaatgtttaactaagcatcctctggcctctcaaataaatgaat 413  Q
                    |||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21730049 ttttctttttttt---cgcagcgaattgaagaaattcttgagaaccatttgcttttgtaatgtttaactaagcatcctctggcctctcaaataaatgaat 21729953  T
Q  414 aatgtttcttcaatgtgtttacctcttctatctatttatgtattcaagatgtatgatgtattaaattttataaagttatttgatgtactaaaatttaaag 513  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21729952 aatgtttcttcaatgtatttacctcttctatctatttatgtattcaagatgtatgatgtattaaattttataaagttatttgatgtactaaaatttaaag 21729853  T
Q  514 ataacaaaatgtatttctcactcgatgacaaggattgtaagttttatgtatcactccctttactcctcaatcttct 589  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  21729852 ataacaaaatgtatttctcactcgatgacaaggattgtaagttttatgtatcagtccctttactcctcaatcttct 21729777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 184 - 276
Target Start/End: Complemental strand, 52532786 - 52532694
Alignment:
Q  184 gatttattcattaattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagtgaacttttgcttataatt 276  Q
    |||| ||||| |||||||| |||||| ||| ||| ||| | ||||||||||||||||||||||||| ||| || |||||||||| ||||||||    
T  52532786 gattgattcaataattaatatatttggtctttattatagatcaaatacattagttattgaatgaatataaaaaatgaacttttgtttataatt 52532694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 178 - 274
Target Start/End: Complemental strand, 1755972 - 1755876
Alignment:
Q  178 ttttttgatttattcattaattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagtgaacttttgcttataa 274  Q
    ||||| |||||||||| ||| |||||||| || ||||||| ||  ||||||||||||| ||||||||||||||||  || |||| ||||||| ||||    
T  1755972 tttttagatttattcaataactaatgtatctggtctgtattatggaccaaatacattaattattgaatgaatctagaaaatgaatttttgctgataa 1755876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 176 - 253
Target Start/End: Complemental strand, 55121285 - 55121208
Alignment:
Q  176 acttttttgatttattcattaattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaa 253  Q
    ||||||| |||||||| | ||||||||||||||| ||    | ||||||||||||||||||||||| |||||| ||||    
T  55121285 actttttagatttattaaataattaatgtatttggtcacatttataaaccaaatacattagttattcaatgaacctaa 55121208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 274
Target Start/End: Complemental strand, 9502956 - 9502885
Alignment:
Q  203 gtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagtgaacttttgcttataa 274  Q
    ||||||||| | ||| ||| |||||||||||||| | |||||||||||||| ||||||  |||| |||||||    
T  9502956 gtatttgatatatattatagaccaaatacattaggtgttgaatgaatctaaaaagtgattttttacttataa 9502885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 27545396 - 27545446
Alignment:
Q  223 accaaatacattagttattgaatgaatctaacaagtgaacttttgcttata 273  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  27545396 accaaatacattagttattgaatgaatctaaaaagtgaacttatgcttata 27545446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 199 - 278
Target Start/End: Original strand, 36141726 - 36141804
Alignment:
Q  199 taatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagtgaacttttgcttataattaa 278  Q
    ||||||||||| ||| ||| ||| | ||||||||||| ||||| ||||||| ||| |||||||| |||||||||||||||    
T  36141726 taatgtatttggtctttattatagatcaaatacattaattattaaatgaatttaa-aagtgaacctttgcttataattaa 36141804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 274
Target Start/End: Original strand, 457602 - 457699
Alignment:
Q  176 acttttttgatttattcattaattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagtgaacttttgcttataa 274  Q
    |||||||||||| ||||| || |||||||||||| ||  ||| ||| |||||||||||||  |||| |||||| |||| ||||| | ||||||||||||    
T  457602 acttttttgattcattcaatatttaatgtatttggtcaatat-atagaccaaatacattatgtattcaatgaacctaaaaagtgcatttttgcttataa 457699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 274
Target Start/End: Complemental strand, 30412707 - 30412610
Alignment:
Q  176 acttttttgatttattcattaattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagtgaacttttgcttataa 274  Q
    |||||||||||| ||||| || |||||||||||| ||  ||| ||| |||||||||||||  |||| |||||| |||| ||||| | ||||||||||||    
T  30412707 acttttttgattcattcaatatttaatgtatttggtcaatat-atagaccaaatacattatgtattcaatgaacctaaaaagtgcatttttgcttataa 30412610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 195 - 276
Target Start/End: Complemental strand, 36141766 - 36141685
Alignment:
Q  195 taattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagtgaacttttgcttataatt 276  Q
    ||||||||||||||||||| ||  | | ||||||||||||||||||| || |||| ||| | || || ||||||||||||||    
T  36141766 taattaatgtatttgatctataataaagaccaaatacattagttattaaaggaatttaaaatgttaatttttgcttataatt 36141685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 52112940 - 52112888
Alignment:
Q  223 accaaatacattagttattgaatgaatctaacaagtgaacttttgcttataat 275  Q
    |||| |||||| | ||||||||||||| ||| |||||||||||||||||||||    
T  52112940 accacatacatcatttattgaatgaatataaaaagtgaacttttgcttataat 52112888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 274
Target Start/End: Complemental strand, 21945146 - 21945071
Alignment:
Q  199 taatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagtgaacttttgcttataa 274  Q
    ||||||||||| ||| ||  ||| |||||||||||||| |||| ||||||||||| ||||||  |||| |||||||    
T  21945146 taatgtatttggtctataatatataccaaatacattaggtattcaatgaatctaaaaagtgattttttacttataa 21945071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 294
Target Start/End: Original strand, 47911925 - 47911996
Alignment:
Q  223 accaaatacattagttattgaatgaatctaacaagtgaacttttgcttataattaaggcaggagggagtagt 294  Q
    |||||||||||||  ||||||||||||| || ||||||  |||||||||||| || | | ||||||||||||    
T  47911925 accaaatacattaaatattgaatgaatcaaaaaagtgattttttgcttataaatatgaccggagggagtagt 47911996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 275
Target Start/End: Complemental strand, 5431391 - 5431353
Alignment:
Q  237 ttattgaatgaatctaacaagtgaacttttgcttataat 275  Q
    ||||||||||||||||| ||||||| |||||||||||||    
T  5431391 ttattgaatgaatctaaaaagtgaatttttgcttataat 5431353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 176 - 274
Target Start/End: Complemental strand, 47911960 - 47911863
Alignment:
Q  176 acttttttgatttattcattaattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagtgaacttttgcttataa 274  Q
    |||||||||||| ||||| || |||||||||||| ||  ||| ||| |||||||||||||  |||| |||||| |||| ||||| | ||||| ||||||    
T  47911960 acttttttgattcattcaatatttaatgtatttggtcaatat-atagaccaaatacattatgtattcaatgaacctaaaaagtgcatttttgtttataa 47911863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 274
Target Start/End: Original strand, 50155356 - 50155429
Alignment:
Q  201 atgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagtgaacttttgcttataa 274  Q
    ||||||||| ||| ||| ||| ||||||||||| | ||| | ||||||||||| |||| ||||||| |||||||    
T  50155356 atgtatttggtctatattatagaccaaatacatcaattactcaatgaatctaaaaagtcaactttttcttataa 50155429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 248
Target Start/End: Original strand, 50308640 - 50308729
Alignment:
Q  159 attatgagcaaaactttacttttttgatttattcattaattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaa 248  Q
    ||||| ||||||| |  ||||||| |||||||||||||| | ||||||||| ||  || |||| ||||||||||| | ||| ||||||||    
T  50308640 attataagcaaaaatcaactttttagatttattcattaaattatgtatttggtcaataacatagaccaaatacatcatttaatgaatgaa 50308729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 275
Target Start/End: Complemental strand, 1409093 - 1409061
Alignment:
Q  243 aatgaatctaacaagtgaacttttgcttataat 275  Q
    ||||||||||| |||||||||||||||||||||    
T  1409093 aatgaatctaaaaagtgaacttttgcttataat 1409061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 10256845 - 10256793
Alignment:
Q  223 accaaatacattagttattgaatgaatctaacaagtgaacttttgcttataat 275  Q
    |||| |||||| | ||||||||||||||||| ||||||| |||| ||||||||    
T  10256845 accacatacatcatttattgaatgaatctaaaaagtgaattttttcttataat 10256793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 279
Target Start/End: Complemental strand, 11864750 - 11864670
Alignment:
Q  199 taatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagtgaacttttgcttataattaag 279  Q
    ||||||||||| | ||||| | | ||||||||||||| | |||||||||||  || || | ||||||||| ||||||||||    
T  11864750 taatgtatttgttatgtattacagaccaaatacattaatcattgaatgaattcaaaaaataaacttttgcatataattaag 11864670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 24198800 - 24198756
Alignment:
Q  227 aatacattagttattgaatgaatctaacaagtgaacttttgctta 271  Q
    ||||||||| ||||||||||||| ||| ||||| |||||||||||    
T  24198800 aatacattatttattgaatgaatttaaaaagtgtacttttgctta 24198756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 275
Target Start/End: Original strand, 28038839 - 28038955
Alignment:
Q  159 attatgagcaaaactttacttttttgatttattcattaattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagt 258  Q
    ||||| ||||||| || ||||||| |||| ||||||||| |  |||||||| ||  ||  |||||| |||||||| | ||| | ||||||||||| ||||    
T  28038839 attataagcaaaaattaactttttagattcattcattaaatgttgtatttggtcaataatataaactaaatacatcatttaataaatgaatctaaaaagt 28038938  T
Q  259 gaacttttgcttataat 275  Q
      | |||||||||||||    
T  28038939 tgatttttgcttataat 28038955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 34597584 - 34597532
Alignment:
Q  223 accaaatacattagttattgaatgaatctaacaagtgaacttttgcttataat 275  Q
    |||| |||||| | || |||||||||||||| ||||||| |||||||||||||    
T  34597584 accacatacatcatttgttgaatgaatctaaaaagtgaatttttgcttataat 34597532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 52923387 - 52923335
Alignment:
Q  223 accaaatacattagttattgaatgaatctaacaagtgaacttttgcttataat 275  Q
    |||| |||||| | |||||||||||| |||| ||||||| |||||||||||||    
T  52923387 accacatacatcatttattgaatgaacctaaaaagtgaaattttgcttataat 52923335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 159 - 275
Target Start/End: Complemental strand, 24820425 - 24820310
Alignment:
Q  159 attatgagcaaaactttacttttttgatttattcattaattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagt 258  Q
    ||||| ||||||| ||  |||||| |||| ||||| ||| | |||||| |||||| ||| |||||||| |||||| | |||||||||||| |||| ||||    
T  24820425 attataagcaaaaattctctttttagattcattcaataaatgatgtatgtgatctttat-ataaaccacatacatcatttattgaatgaacctaagaagt 24820327  T
Q  259 gaacttttgcttataat 275  Q
    ||| |||||||||||||    
T  24820326 gaatttttgcttataat 24820310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 279
Target Start/End: Original strand, 38414304 - 38414358
Alignment:
Q  225 caaatacattagttattgaatgaatctaacaagtgaacttttgcttataattaag 279  Q
    ||||||||||  ||||||||||||||||| ||||||||||||  |||||||||||    
T  38414304 caaatacattcattattgaatgaatctaaaaagtgaacttttatttataattaag 38414358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 2627238 - 2627186
Alignment:
Q  223 accaaatacattagttattgaatgaatctaacaagtgaacttttgcttataat 275  Q
    ||||||||||||| ||||||||||||||||| |||| | ||| ||||||||||    
T  2627238 accaaatacattatttattgaatgaatctaaaaagttatcttatgcttataat 2627186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 275
Target Start/End: Original strand, 11335579 - 11335695
Alignment:
Q  159 attatgagcaaaactttacttttttgatttattcattaattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagt 258  Q
    ||||| ||||||||||||| |||| |||| ||||||||| | |||||| || ||| || || | | || |||||||| | ||||||||||||||| | |     
T  11335579 attataagcaaaactttacattttagattcattcattaaatgatgtatgtgctctctaacaaagatcatatacattattaattgaatgaatctaaaatgc 11335678  T
Q  259 gaacttttgcttataat 275  Q
     || |||||||||||||    
T  11335679 aaagttttgcttataat 11335695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 279
Target Start/End: Complemental strand, 42786475 - 42786376
Alignment:
Q  179 tttttgatttattcattaattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagtgaacttttgcttataattaa 278  Q
    ||||||||||||| | || |||||||||||| ||| | || ||| | || ||||| | ||||||||||||||||| |||| ||||||| ||||||| |||    
T  42786475 tttttgatttattgaatagttaatgtatttggtctatttc-taagctaagtacatcaattattgaatgaatctaaaaagttaactttttcttataaataa 42786377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 274
Target Start/End: Original strand, 24418961 - 24419007
Alignment:
Q  228 atacattagttattgaatgaatctaacaagtgaacttttgcttataa 274  Q
    |||||| | ||||||||||||||||| ||||||| ||||||||||||    
T  24418961 atacatcatttattgaatgaatctaaaaagtgaatttttgcttataa 24419007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 275
Target Start/End: Original strand, 6197838 - 6197954
Alignment:
Q  159 attatgagcaaaactttacttttttgatttattcattaattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagt 258  Q
    ||||| |||||||||  ||||||| |||  ||| | || ||||||||| |  ||| ||||||| |  |||||||||| ||||| |||| |||||| ||||    
T  6197838 attataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttatcatagattaaatacattaattatttaatgtatctaaaaagt 6197937  T
Q  259 gaacttttgcttataat 275  Q
     || |||||||||||||    
T  6197938 aaagttttgcttataat 6197954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 9793444 - 9793496
Alignment:
Q  227 aatacattagttattgaatgaatctaacaagtgaacttttgcttataattaag 279  Q
    ||||||||||||||||||||||||||| | || ||||||| | ||| ||||||    
T  9793444 aatacattagttattgaatgaatctaaaatgtaaacttttacatatcattaag 9793496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 276
Target Start/End: Original strand, 11607324 - 11607415
Alignment:
Q  185 atttattcattaattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagtgaacttttgcttataatt 276  Q
    ||||||| | ||| ||||||||||| | ||||| |||||||||||| |||| ||||||||| |||||||||| | || ||||| ||||||||    
T  11607324 atttatttaataactaatgtatttggtttgtattataaaccaaatatattaattattgaataaatctaacaaataaatttttgtttataatt 11607415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 274
Target Start/End: Complemental strand, 1100185 - 1100070
Alignment:
Q  159 attatgagcaaaactttacttttttgatttattcattaattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagt 258  Q
    ||||| ||||||||||| | |||| |||| ||||||||| | |||||| |  ||| ||| ||| |||| |||||| | ||| ||||||||||||| | ||    
T  1100185 attataagcaaaactttgcattttagattaattcattaaatgatgtatgtagtctttattatagaccacatacatcatttaatgaatgaatctaaaatgt 1100086  T
Q  259 gaacttttgcttataa 274  Q
     |||||||||||||||    
T  1100085 aaacttttgcttataa 1100070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 228 - 275
Target Start/End: Complemental strand, 18261659 - 18261612
Alignment:
Q  228 atacattagttattgaatgaatctaacaagtgaacttttgcttataat 275  Q
    |||||||| ||||||||||||||||  |||||||||||||||||||||    
T  18261659 atacattatttattgaatgaatctataaagtgaacttttgcttataat 18261612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 892613 - 892563
Alignment:
Q  225 caaatacattagttattgaatgaatctaacaagtgaacttttgcttataat 275  Q
    ||||||||||| ||||| ||||||||||| ||||||| |||||||||||||    
T  892613 caaatacattaattattcaatgaatctaaaaagtgaatttttgcttataat 892563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 37321352 - 37321302
Alignment:
Q  199 taatgtatttgatctgtatcataaaccaaatacattagttattgaatgaat 249  Q
    ||||||||||||||| |||   |||||||||||||||||||||||||||||    
T  37321352 taatgtatttgatctctattgcaaaccaaatacattagttattgaatgaat 37321302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 275
Target Start/End: Complemental strand, 1098755 - 1098640
Alignment:
Q  159 attatgagcaaaactttacttttttgatttattcattaattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagt 258  Q
    ||||| ||||||| |||| ||||| |||| ||| | ||| |||||||| |  ||| ||| ||| |||| |||||| | ||||||||||||||||| ||||    
T  1098755 attataagcaaaagtttattttttagattcatttaataaataatgtatgtagtctatat-atagaccacatacatcatttattgaatgaatctaaaaagt 1098657  T
Q  259 gaacttttgcttataat 275  Q
     ||||||| ||||||||    
T  1098656 caacttttacttataat 1098640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 275
Target Start/End: Complemental strand, 29486590 - 29486510
Alignment:
Q  195 taattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagtgaacttttgcttataat 275  Q
    |||||||| |||||  ||| |||||||||| | |||||||| ||||| |||| |||||| | ||||| |||||||||||||    
T  29486590 taattaatatatttagtctttatcataaactagatacattaattattcaatgtatctaaaatgtgaaattttgcttataat 29486510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 892563 - 892680
Alignment:
Q  159 attatgagcaaaactttacttttttgatttattcattaattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagt 258  Q
    ||||| ||||||| || ||||||| |||| ||| | ||||||||||||||| ||| ||  ||| || | ||||||  |||||| ||||||| | | ||||    
T  892563 attataagcaaaaattcactttttagattcattgaataattaatgtatttgttctatactatatactagatacatccgttattcaatgaattttaaaagt 892662  T
Q  259 gaacttttgcttataatt 276  Q
     || ||||||||||||||    
T  892663 aaatttttgcttataatt 892680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 13654587 - 13654636
Alignment:
Q  226 aaatacattagttattgaatgaatctaacaagtgaacttttgcttataat 275  Q
    |||||||| | ||||||||||||| ||| ||||||| |||||||||||||    
T  13654587 aaatacatcatttattgaatgaatttaaaaagtgaatttttgcttataat 13654636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 275
Target Start/End: Original strand, 1098640 - 1098755
Alignment:
Q  159 attatgagcaaaactttacttttttgatttattcattaattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagt 258  Q
    ||||| || |||| || ||||||| |||| ||||| ||| | |||||| || ||| ||| ||| || | |||||||| ||||| ||||||||||| || |    
T  1098640 attataagtaaaagttgactttttagattcattcaataaatgatgtatgtggtctatat-atagactacatacattatttattaaatgaatctaaaaaat 1098738  T
Q  259 gaacttttgcttataat 275  Q
     ||||||||||||||||    
T  1098739 aaacttttgcttataat 1098755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 1138248 - 1138284
Alignment:
Q  173 tttacttttttgatttattcattaattaatgtatttg 209  Q
    ||||||||||||||||||| | |||||||||||||||    
T  1138248 tttacttttttgatttattgaataattaatgtatttg 1138284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 13391595 - 13391543
Alignment:
Q  223 accaaatacattagttattgaatgaatctaacaagtgaacttttgcttataat 275  Q
    ||||||||||| | ||||||||||||||||| ||||  |||||| ||||||||    
T  13391595 accaaatacatcatttattgaatgaatctaaaaagttgacttttacttataat 13391543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 275
Target Start/End: Original strand, 40515277 - 40515309
Alignment:
Q  243 aatgaatctaacaagtgaacttttgcttataat 275  Q
    ||||||||||| |||||||||||||||||||||    
T  40515277 aatgaatctaaaaagtgaacttttgcttataat 40515309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 275
Target Start/End: Complemental strand, 2401143 - 2401052
Alignment:
Q  184 gatttattcattaattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagtgaacttttgcttataat 275  Q
    |||||||||||||| | ||||||||  ||| ||| ||  ||||||||||| | ||||||||||||| ||| |||| ||||||||||||||||    
T  2401143 gatttattcattaaatgatgtatttagtctatattattgaccaaatacatcatttattgaatgaatttaaaaagttaacttttgcttataat 2401052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 178 - 279
Target Start/End: Original strand, 134527 - 134628
Alignment:
Q  178 ttttttgatttattcattaattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagtgaacttttgcttataatta 277  Q
    ||||| ||||||||||  || |||| |||||||||| ||| | |||| |||||||||| |||| |||||||| ||| |||| || |||| ||||||||||    
T  134527 tttttagatttattcagcaactaatatatttgatctatattacaaactaaatacattacttatcgaatgaatataaaaagtaaagtttttcttataatta 134626  T
Q  278 ag 279  Q
    ||    
T  134627 ag 134628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 275
Target Start/End: Complemental strand, 11796712 - 11796597
Alignment:
Q  159 attatgagcaaaactttacttttttgatttattcattaattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagt 258  Q
    ||||| ||||||| || ||||||| |||||||||| ||| | |||||| | |||| ||| |||||||| ||| || | | |||||||||||| || ||||    
T  11796712 attataagcaaaaattcactttttagatttattcaataaatgatgtatgtaatctatat-ataaaccacatatatcattcattgaatgaatcgaaaaagt 11796614  T
Q  259 gaacttttgcttataat 275  Q
     ||||||||||||||||    
T  11796613 caacttttgcttataat 11796597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 275
Target Start/End: Complemental strand, 22020166 - 22020128
Alignment:
Q  237 ttattgaatgaatctaacaagtgaacttttgcttataat 275  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  22020166 ttattgaatgaatctaaaaagtgaacttttgcttataat 22020128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 178 - 275
Target Start/End: Original strand, 37255713 - 37255809
Alignment:
Q  178 ttttttgatttattcattaattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagtgaacttttgcttataat 275  Q
    ||||| |||| ||||| ||| | |||||| || ||| ||| |||||| | |||||| | ||||||||||||| ||| |||||||||||||||||||||    
T  37255713 tttttagattcattcaataaatgatgtatgtggtctatat-ataaactacatacataatttattgaatgaatttaaaaagtgaacttttgcttataat 37255809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 5535789 - 5535841
Alignment:
Q  223 accaaatacattagttattgaatgaatctaacaagtgaacttttgcttataat 275  Q
    |||| |||||| |||||||||||||| ||||||||| || |||||||||||||    
T  5535789 accacatacatcagttattgaatgaacctaacaagtcaatttttgcttataat 5535841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 275
Target Start/End: Original strand, 22235308 - 22235388
Alignment:
Q  195 taattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagtgaacttttgcttataat 275  Q
    ||||| || |||||||||| ||  |||||||| |||||| ||||||| ||||||||||| | ||||  |||||||||||||    
T  22235308 taattgatatatttgatctttaatataaaccagatacatcagttattcaatgaatctaaaatgtgattttttgcttataat 22235388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 270
Target Start/End: Original strand, 4386335 - 4386445
Alignment:
Q  159 attatgagcaaaactttacttttttgatttattcattaattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagt 258  Q
    ||||| ||||||| || ||||||| |||| ||| ||||| | |||||| || ||| ||| |||||| | ||| || | ||||||||||||||||| ||||    
T  4386335 attataagcaaaagttgactttttagattaatttattaaatgatgtatgtggtctatat-ataaactacatagatcatttattgaatgaatctaaaaagt 4386433  T
Q  259 gaacttttgctt 270  Q
     |||||||||||    
T  4386434 aaacttttgctt 4386445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 278
Target Start/End: Original strand, 32738069 - 32738148
Alignment:
Q  200 aatgtatttgatctgtatc-ataaaccaaatacattagttattgaatgaatctaacaagtgaacttttgcttataattaa 278  Q
    |||||||||||| |||||  | |||| |||||| ||||| ||||||||||||||| ||||| | |||| |||||||||||    
T  32738069 aatgtatttgatatgtatttacaaactaaatacgttagtgattgaatgaatctaaaaagtggatttttacttataattaa 32738148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 35005131 - 35005182
Alignment:
Q  223 accaaatacattagttattgaatgaatctaacaagtgaacttttgcttataa 274  Q
    |||| |||||||| ||||||||||||||||| || |||| ||||||||||||    
T  35005131 accacatacattatttattgaatgaatctaaaaattgaatttttgcttataa 35005182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 292
Target Start/End: Original strand, 53225674 - 53225793
Alignment:
Q  173 tttacttttttgatttattcattaattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagtgaacttttgcttat 272  Q
    ||||||||||||||| |||   ||| | ||||||||| |||  ||  || ||||||||||||| ||||| ||||||||||| |||| || |||| |||||    
T  53225674 tttacttttttgattcattgcataaatgatgtatttggtctacattctataccaaatacattaattattcaatgaatctaaaaagtcaattttttcttat 53225773  T
Q  273 aattaaggcaggagggagta 292  Q
    || || | | ||||||||||    
T  53225774 aaataggaccggagggagta 53225793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 273
Target Start/End: Original strand, 13689617 - 13689662
Alignment:
Q  228 atacattagttattgaatgaatctaacaagtgaacttttgcttata 273  Q
    |||||||| | ||||||||||||||| ||||||| |||||||||||    
T  13689617 atacattattaattgaatgaatctaaaaagtgaatttttgcttata 13689662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 19934702 - 19934650
Alignment:
Q  223 accaaatacattagttattgaatgaatctaacaagtgaacttttgcttataat 275  Q
    |||| |||||| | ||||||||||||||||| ||||| | |||||||||||||    
T  19934702 accacatacatcatttattgaatgaatctaaaaagtggaattttgcttataat 19934650  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 33508607 - 33508643
Alignment:
Q  222 aaccaaatacattagttattgaatgaatctaacaagt 258  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  33508607 aaccatatacattagttattcaatgaatctaacaagt 33508643  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 219 - 279
Target Start/End: Complemental strand, 46462448 - 46462388
Alignment:
Q  219 ataaaccaaatacattagttattgaatgaatctaacaagtgaacttttgcttataattaag 279  Q
    |||||||| |||||| | ||||| ||||||||||| |||||||   |||||||||||||||    
T  46462448 ataaaccatatacatcatttatttaatgaatctaaaaagtgaaaagttgcttataattaag 46462388  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 54164877 - 54164825
Alignment:
Q  223 accaaatacattagttattgaatgaatctaacaagtgaacttttgcttataat 275  Q
    |||| |||||| | ||||||||||||||||| ||||| | |||||||||||||    
T  54164877 accacatacatcatttattgaatgaatctaaaaagtggaattttgcttataat 54164825  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 34840673 - 34840609
Alignment:
Q  228 atacattagttattgaatgaatctaacaagtgaacttttgcttataattaaggcaggagggagta 292  Q
    |||||| | ||||||||||||||||| ||||||||||||||||||||| | | | ||||||||||    
T  34840673 atacatcatttattgaatgaatctaaaaagtgaacttttgcttataataatgaccggagggagta 34840609  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 274
Target Start/End: Original strand, 48872972 - 48873068
Alignment:
Q  178 ttttttgatttattcattaattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagtgaacttttgcttataa 274  Q
    |||||| ||| ||||||||| |||| |||||| || |||  |   ||||||||||||| ||||||||||||| ||| || |||||||||||||||||    
T  48872972 tttttttattcattcattaactaatatatttggtcagtaataccgaccaaatacattaattattgaatgaatttaaaaattgaacttttgcttataa 48873068  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 173 - 292
Target Start/End: Complemental strand, 41850714 - 41850595
Alignment:
Q  173 tttacttttttgatttattcattaattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagtgaacttttgcttat 272  Q
    ||||||||||||||| |||   ||| | ||||||||| ||| |||  || ||||||||||||| ||||| ||||||||||| || | ||||||| |||||    
T  41850714 tttacttttttgattcattgcataaatgatgtatttgctctatattttataccaaatacattaattattcaatgaatctaaaaaattaactttttcttat 41850615  T
Q  273 aattaaggcaggagggagta 292  Q
    || |||| | | ||||||||    
T  41850614 aaataagaccgtagggagta 41850595  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 274
Target Start/End: Original strand, 35274442 - 35274539
Alignment:
Q  176 acttttttgatttattcattaattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagtgaacttttgcttataa 274  Q
    |||||||||||| ||||| || |||||||||||| ||  ||| ||| |||||||||||||  |||| |||||| |||| ||||| | ||||||||||||    
T  35274442 acttttttgattcattcaatatttaatgtatttggtcaatat-atagaccaaatacattatgtattcaatgaacctaaaaagtgcatttttgcttataa 35274539  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 258
Target Start/End: Complemental strand, 7097202 - 7097163
Alignment:
Q  219 ataaaccaaatacattagttattgaatgaatctaacaagt 258  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  7097202 ataaaccaaatacattagatattgaatgaatctaaaaagt 7097163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 8169177 - 8169224
Alignment:
Q  228 atacattagttattgaatgaatctaacaagtgaacttttgcttataat 275  Q
    |||||| | ||||||||||||||||| |||| ||||||||||||||||    
T  8169177 atacatcatttattgaatgaatctaaaaagttaacttttgcttataat 8169224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 11602848 - 11602895
Alignment:
Q  228 atacattagttattgaatgaatctaacaagtgaacttttgcttataat 275  Q
    |||||| | ||||||||||||||||| ||||||||||||| |||||||    
T  11602848 atacatcatttattgaatgaatctaaaaagtgaacttttgtttataat 11602895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 296
Target Start/End: Complemental strand, 13807290 - 13807237
Alignment:
Q  243 aatgaatctaacaagtgaacttttgcttataattaaggcaggagggagtagtat 296  Q
    ||||||||||| |||| ||||||| ||||||| |||| | ||||||||||||||    
T  13807290 aatgaatctaaaaagtcaactttttcttataaataagaccggagggagtagtat 13807237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 275
Target Start/End: Complemental strand, 8169224 - 8169109
Alignment:
Q  159 attatgagcaaaactttacttttttgatttattcattaattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagt 258  Q
    ||||| ||||||| || ||||||| |||| ||||| ||| | |||||| |  ||| ||| ||| |||| |||||| | |||||||||||| |||| |||     
T  8169224 attataagcaaaagttaactttttagattcattcaataaatgatgtatgtagtctatat-atagaccacatacatcatttattgaatgaacctaaaaagc 8169126  T
Q  259 gaacttttgcttataat 275  Q
     ||||||||||||||||    
T  8169125 caacttttgcttataat 8169109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 9555328 - 9555388
Alignment:
Q  215 tatcataaaccaaatacattagttattgaatgaatctaacaagtgaacttttgcttataat 275  Q
    |||||||||||| |||||| | ||| ||||||||||||| | || || |||||||||||||    
T  9555328 tatcataaaccacatacatcatttaatgaatgaatctaaaatgtaaagttttgcttataat 9555388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 179 - 275
Target Start/End: Complemental strand, 10095827 - 10095731
Alignment:
Q  179 tttttgatttattcattaattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagtgaacttttgcttataat 275  Q
    |||| |||||||| ||| | | |||||| || ||| ||||||| |||| |||||| | ||| ||||||||||||| | || || |||||||||||||    
T  10095827 ttttagatttatttatttaattatgtatatggtctttatcatagaccacatacatcatttaatgaatgaatctaaaatgttaatttttgcttataat 10095731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 26982824 - 26982776
Alignment:
Q  227 aatacattagttattgaatgaatctaacaagtgaacttttgcttataat 275  Q
    ||||||||| ||||| |||| |||||| ||||||| |||||||||||||    
T  26982824 aatacattaattattcaatgtatctaaaaagtgaagttttgcttataat 26982776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 29365679 - 29365751
Alignment:
Q  201 atgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagtgaacttttgcttata 273  Q
    ||||||||||||| |||  || ||||||||||||| ||| | ||||||||||| |||| || |||| ||||||    
T  29365679 atgtatttgatctatattctataccaaatacattaattactcaatgaatctaaaaagtcaattttttcttata 29365751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 178 - 258
Target Start/End: Complemental strand, 48634285 - 48634206
Alignment:
Q  178 ttttttgatttattcattaattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagt 258  Q
    ||||| |||| ||||| || ||||||||||| |||| ||| ||| |||||||||||||  |||| ||||||||||| ||||    
T  48634285 tttttagattcattcaatatttaatgtatttaatctatat-atagaccaaatacattatgtattcaatgaatctaaaaagt 48634206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 274
Target Start/End: Original strand, 28248966 - 28249064
Alignment:
Q  176 acttttttgatttattcattaattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagtgaacttttgcttataa 274  Q
    |||||||||||| |||   ||| ||||||||||  ||| |||  || ||||||||||||| ||||| ||||||||||| |||| ||||||| |||||||    
T  28248966 acttttttgattaattgcataaataatgtatttagtctatattctataccaaatacattaattatttaatgaatctaaaaagtcaactttttcttataa 28249064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 274
Target Start/End: Original strand, 41153144 - 41153242
Alignment:
Q  176 acttttttgatttattcattaattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagtgaacttttgcttataa 274  Q
    |||||||||||| |||   ||| | ||||||||| ||| ||| ||||||||||||||| | ||| | ||||||||||| |||| ||||||| |||||||    
T  41153144 acttttttgattcattgcataaatgatgtatttggtctatattataaaccaaatacatcaattactcaatgaatctaaaaagtcaactttttcttataa 41153242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 253
Target Start/End: Complemental strand, 25637024 - 25636920
Alignment:
Q  149 tccgactttaattatgagcaaaactttacttttttgatttattcattaattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaa 248  Q
    |||||||||| |||| | ||||| ||||||||||  ||| ||| | || ||||||||||| ||||||||  || ||||||||| ||| | || |||||||    
T  25637024 tccgactttacttatcatcaaaagtttactttttaaattaattaaatacttaatgtatttaatctgtattgtagaccaaatactttaatcatcgaatgaa 25636925  T
Q  249 tctaa 253  Q
    |||||    
T  25636924 tctaa 25636920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 5528218 - 5528168
Alignment:
Q  229 tacattagttattgaatgaatctaacaagtgaacttttgcttataattaag 279  Q
    ||||||||||||||||||||| ||| || | ||||||| ||||||||||||    
T  5528218 tacattagttattgaatgaatataaaaaataaacttttacttataattaag 5528168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 273
Target Start/End: Original strand, 44274622 - 44274667
Alignment:
Q  228 atacattagttattgaatgaatctaacaagtgaacttttgcttata 273  Q
    |||||| | ||||||||||||||||| ||||||| |||||||||||    
T  44274622 atacatcatttattgaatgaatctaaaaagtgaatttttgcttata 44274667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 275
Target Start/End: Complemental strand, 15119905 - 15119789
Alignment:
Q  159 attatgagcaaaactttacttttttgatttattcattaattaatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagt 258  Q
    ||||| ||||||| | ||| |||| |||||||||||| | | |||||| |  ||| ||| ||| |||| |||||| | ||| ||||||||||||| | ||    
T  15119905 attataagcaaaaatctacattttagatttattcatttaatgatgtatattgtctttattatagaccacatacatcatttaatgaatgaatctaaaatgt 15119806  T
Q  259 gaacttttgcttataat 275  Q
     || |||||||||||||    
T  15119805 taatttttgcttataat 15119789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 41824329 - 41824273
Alignment:
Q  219 ataaaccaaatacattagttattgaatgaatctaacaagtgaacttttgcttataat 275  Q
    |||||| | |||||| | ||||||||||||||||| || |||| |||||||||||||    
T  41824329 ataaactacatacataatttattgaatgaatctaaaaaatgaatttttgcttataat 41824273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 202 - 275
Target Start/End: Complemental strand, 133729 - 133656
Alignment:
Q  202 tgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagtgaacttttgcttataat 275  Q
    ||||| |||| ||||| ||| |||| |||||||||||| | ||| ||||||| |||||||| ||||||||||||    
T  133729 tgtatctgatatgtattatagaccagatacattagttactcaatcaatctaaaaagtgaacatttgcttataat 133656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 272
Target Start/End: Original strand, 27159122 - 27159195
Alignment:
Q  199 taatgtatttgatctgtatcataaaccaaatacattagttattgaatgaatctaacaagtgaacttttgcttat 272  Q
    ||||||||||||| | ||| ||| | |||||||||||| | ||||||||| |||| ||||||  ||||||||||    
T  27159122 taatgtatttgatatatattatagatcaaatacattaggtgttgaatgaacctaaaaagtgattttttgcttat 27159195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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