View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_low_30 (Length: 353)
Name: NF20570_low_30
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 12 - 331
Target Start/End: Complemental strand, 42630204 - 42629869
Alignment:
| Q |
12 |
gaacctgtgaaacaagttgctccttcagataacaatgggtctgtccattgactgcactagtatatcccctttggattaaaaaatcaaagaatcatttg-- |
109 |
Q |
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| T |
42630204 |
gaacctgtcaaacaagttgctccttcagataacaatgggtctgtccattgactgtactagtatatcctctttggattaaaaaatcaaagaatcatttggt |
42630105 |
T |
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| Q |
110 |
-------------ttatcattgttagaagttcctataatcatgtttaattannnnnnnnggggg-aaaattcactttcatatataaatttgagctaaggg |
195 |
Q |
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| T |
42630104 |
tgtcttctttttgttatcattgttagaagttcccataatcatgtttaattattttttttggggggaaaattcactttcatatataaatttgagctaaggg |
42630005 |
T |
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| Q |
196 |
ttatgggagtttgaaagtcccgaattcaaaaccaaataaaggagnnnnnnnctagtctattaatctaaaaactaatctctcccactctcattgctctctc |
295 |
Q |
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| T |
42630004 |
ttatgggagtttgaaagtcccgaattcaaaaccaaataaaggagaaaaaaactagtctattaatctaaaaactaatctctcccactctcattgctctctc |
42629905 |
T |
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| Q |
296 |
aatgaatcagaacctagaaatgcaagtcaaagaaag |
331 |
Q |
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| T |
42629904 |
aatgaatcagaacctagaaatgtaagtcaaagaaag |
42629869 |
T |
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