View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_low_34 (Length: 325)
Name: NF20570_low_34
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_low_34 |
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| [»] scaffold0643 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: scaffold0643 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: scaffold0643
Description:
Target: scaffold0643; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 7 - 325
Target Start/End: Complemental strand, 8232 - 7914
Alignment:
| Q |
7 |
cagcagctataggagataagctagtgagcaaacagcccctccttgtatcaacgaaggaaggggacaccataggtgaagaaaagaaaacaagcagtaccac |
106 |
Q |
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| T |
8232 |
cagcagctataggagataagctagcgagcaaacagcccctccttgtatcagcgaaagaaggggacaccacaggtgaagaaaagaaaacaagcagtaccac |
8133 |
T |
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| Q |
107 |
atagcaccttagcaactaggacaaaccgcacaaacagcacagtccacgacagagataacaaaaaccaccagaaaaatcaaattccccatctctggctctt |
206 |
Q |
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| T |
8132 |
agagcgccttagcaactaggacaaaccgcacaaacaacacagtccacgacagagataacaaaaaccaccagaaaaatcaaattccccatctctggctctt |
8033 |
T |
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| Q |
207 |
ctttccttatctacaaaaacagctaattggattccaccgccactcatagtacaagcacgccggaatacgataaacaacttatttccaacttatagcacaa |
306 |
Q |
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| T |
8032 |
ctttcctcatctacaaagacaactaattggattccaccgccactcatagtacaagtacgccggaatacgataaacaacttatttccaacttatagcacaa |
7933 |
T |
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| Q |
307 |
agcttgtatgtgtaaaaat |
325 |
Q |
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| T |
7932 |
agcttgtatgtgtaaaaat |
7914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 121 - 325
Target Start/End: Original strand, 30014166 - 30014371
Alignment:
| Q |
121 |
actaggacaaaccgcacaaacagcacagtccacgacagagataacaaaaaccaccagaaaaatcaaattccccatctctggctcttctttccttatctac |
220 |
Q |
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| T |
30014166 |
actaggacaaaccgcacaaacaacacagtccacgatagagataacaaaaaccactagaaaaatcaaattccccatctctggctcttctttcctcatctac |
30014265 |
T |
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| Q |
221 |
aaaaacagctaattggattccaccgccactcatagtacaagcacgccggaatacgataaacaacttatttccaacttatagcac-aaagcttgtatgtgt |
319 |
Q |
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| T |
30014266 |
aaagacagctaattggattccaccgccactcatagtacaagcatgccggtatacgataaacaacttatttccagcttatagcacaaaagcttgtatgtgt |
30014365 |
T |
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| Q |
320 |
aaaaat |
325 |
Q |
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|||||| |
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| T |
30014366 |
aaaaat |
30014371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 30014080 - 30014132
Alignment:
| Q |
36 |
aaacagcccctccttgtatcaacgaaggaaggggacaccataggtgaagaaaa |
88 |
Q |
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| T |
30014080 |
aaacagcccctccttgtatcagcgaaagaaggggacaccacaggtgaagaaaa |
30014132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 191 - 325
Target Start/End: Complemental strand, 17054948 - 17054814
Alignment:
| Q |
191 |
cccatctctggctcttctttccttatctacaaaaacagctaattggattccaccgccactcatagtacaagcacgccggaatacgataaacaacttattt |
290 |
Q |
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| T |
17054948 |
cccatctctggctcttctttcctcatctacaaagacaactaattggattccaccaccactcatagtacaagcacaccggaatacgataaataacttattt |
17054849 |
T |
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| Q |
291 |
ccaacttatagcacaaagcttgtatgtgtaaaaat |
325 |
Q |
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| T |
17054848 |
tcaacttatagcacaaggcttgtatgtgtaaaaat |
17054814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 307
Target Start/End: Original strand, 43505835 - 43505867
Alignment:
| Q |
275 |
gataaacaacttatttccaacttatagcacaaa |
307 |
Q |
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| T |
43505835 |
gataaacaacttatttgcaacttatagcacaaa |
43505867 |
T |
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