View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20570_low_36 (Length: 312)
Name: NF20570_low_36
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_low_36 |
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| [»] scaffold0042 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 306
Target Start/End: Original strand, 14874651 - 14874949
Alignment:
| Q |
8 |
cgaagaatattatgaagattaaaaaactatacctgaataagcagcaatggagtgttaagcacatctgaagaaccaggaacatcataaagaagttcatcca |
107 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
14874651 |
cgaagcatattatgaagattaaaaaactatacctgaataagcagcaatggagtgttaagcacatctgaagaaccaagaacatcataaagaagttcatcca |
14874750 |
T |
|
| Q |
108 |
aacaacgaaatggaggatgaagagtatcacccaaatctttaatggtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14874751 |
aacaacgaaatggaggatgaagagtatcacccaaatctttaatggtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccat |
14874850 |
T |
|
| Q |
208 |
aagtttcctaccaggaccttcccttaatctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtcttt |
306 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
14874851 |
aagtttcctaccaggaccttcccttaacctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataacatcaacaggatcttt |
14874949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 33 - 312
Target Start/End: Original strand, 14879962 - 14880241
Alignment:
| Q |
33 |
actatacctgaataagcagcaatggagtgttaagcacatctgaagaaccaggaacatcataaagaagttcatccaaacaacgaaatggaggatgaagagt |
132 |
Q |
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|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||| ||| |||||||||||||||||| |
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| T |
14879962 |
actatacctgaataagcatcaatggagtgttaatcacatctgaagaaccaggaacataataaagaagctcatccaagcaaggaaatggaggatgaagagc |
14880061 |
T |
|
| Q |
133 |
atcacccaaatctttaatggtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttccctt |
232 |
Q |
| |
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|||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14880062 |
atcaccaaactctttaagagtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttccctt |
14880161 |
T |
|
| Q |
233 |
aatctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtcttttcctgc |
312 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| |
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| T |
14880162 |
aatctacctgcaaatggataataaaatacaagtgtttttgctaatgcttttctaataacatcaacaggatctttccctgc |
14880241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 34 - 312
Target Start/End: Complemental strand, 14757400 - 14757122
Alignment:
| Q |
34 |
ctatacctgaataagcagcaatggagtgttaagcacatctgaagaaccaggaacatcataaagaagttcatccaaacaacgaaatggaggatgaagagta |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| | ||| ||||||||||||||||| |
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| T |
14757400 |
ctatacctgaataagcagcaatggagtgttaagcatatctgaagaaccaggaacatcataaagaagctcatctatgcaaggaaatggaggatgaagatct |
14757301 |
T |
|
| Q |
134 |
tcacccaaatctttaatggtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttccctta |
233 |
Q |
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||||| || ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14757300 |
tcaccaaattctttcaaactaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctacccggaccttccctta |
14757201 |
T |
|
| Q |
234 |
atctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtcttttcctgc |
312 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14757200 |
atctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtctttccctgc |
14757122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 36 - 312
Target Start/End: Original strand, 14769473 - 14769749
Alignment:
| Q |
36 |
atacctgaataagcagcaatggagtgttaagcacatctgaagaaccaggaacatcataaagaagttcatccaaacaacgaaatggaggatgaagagtatc |
135 |
Q |
| |
|
|||||||||| | || ||||||| ||||||||| ||||||||||||||||||||| ||||||| |||||||||||| |||| ||||| ||||||| ||| |
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|
| T |
14769473 |
atacctgaatcaccaacaatggacagttaagcacttctgaagaaccaggaacatcaaaaagaagctcatccaaacaaggaaaaggaggttgaagagcatc |
14769572 |
T |
|
| Q |
136 |
acccaaatctttaatggtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttcccttaat |
235 |
Q |
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||| || ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14769573 |
accaaattctttcaaactaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttcccttaat |
14769672 |
T |
|
| Q |
236 |
ctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtcttttcctgc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| |
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| T |
14769673 |
ctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataaaatcaacaggatctttacctgc |
14769749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 35 - 312
Target Start/End: Original strand, 14789521 - 14789798
Alignment:
| Q |
35 |
tatacctgaataagcagcaatggagtgttaagcacatctgaagaaccaggaacatcataaagaagttcatccaaacaacgaaatggaggatgaagagtat |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| | ||| ||||||||||||||||| | |
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| T |
14789521 |
tatacctgaataagcagcaatggagtgttaagcacaactgaagaaccaggaacatcataaagaagctcatctatgcaaggaaatggaggatgaagatctt |
14789620 |
T |
|
| Q |
135 |
cacccaaatctttaatggtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttcccttaa |
234 |
Q |
| |
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|||| || | || || |||||||| |||||||||||||||||||||| |||||| || | |||||||||||||||||||||| |||||||||||||| |
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|
| T |
14789621 |
caccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaataccttcatcattacaatccaccataagtttcctacttggaccttcccttaa |
14789720 |
T |
|
| Q |
235 |
tctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtcttttcctgc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
14789721 |
tctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtctttccctgc |
14789798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 37 - 306
Target Start/End: Original strand, 91636 - 91905
Alignment:
| Q |
37 |
tacctgaataagcagcaatggagtgttaagcacatctgaagaaccaggaacatcataaagaagttcatccaaacaacgaaatggaggatgaagagtatca |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||| ||| |||| || |||||||||||||||| | |||| |
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|
| T |
91636 |
tacctgaataagcagcaatggagtgttaagaacatctgaagaaccaggaacatcatagataagctcacccaagcatggaaatggaggatgaagtgcatca |
91735 |
T |
|
| Q |
137 |
cccaaatctttaatggtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttcccttaatc |
236 |
Q |
| |
|
|| || | ||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||| || | |
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|
| T |
91736 |
ccaaattgtttaagagtaacatcagcatcagcttcaataaacaaaacaccttctccagtacaatcaaccataagtttcctgccgggaccttccctcaacc |
91835 |
T |
|
| Q |
237 |
tacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtcttt |
306 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||| || | ||||||||||||| | ||||||||||||| |
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|
| T |
91836 |
tacctgccaatggataataaaacacaagcgttttcgcaagggcttttctaataacaacaacagggtcttt |
91905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 93 - 312
Target Start/End: Complemental strand, 14857695 - 14857476
Alignment:
| Q |
93 |
aaagaagttcatccaaacaacgaaatggaggatgaagagtatcacccaaatctttaatggtaacatctgcatcagcttcaataaacaaaacaccttctcc |
192 |
Q |
| |
|
||||||| |||||||||||| |||| ||||| ||||||| |||||| || ||||| | ||||||| |||||||||||||||||||||| |||||| | |
|
|
| T |
14857695 |
aaagaagctcatccaaacaaggaaaaggaggttgaagagcatcaccaaattctttcaaactaacatcagcatcagcttcaataaacaaaataccttcatc |
14857596 |
T |
|
| Q |
193 |
agtgcaatccaccataagtttcctaccaggaccttcccttaatctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataata |
292 |
Q |
| |
|
| | ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14857595 |
attacaatctaccataagcttcctaccaggaccttcccttaatctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataata |
14857496 |
T |
|
| Q |
293 |
tcaacagggtcttttcctgc |
312 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
14857495 |
tcaacagggtctttccctgc |
14857476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 306
Target Start/End: Original strand, 33003102 - 33003148
Alignment:
| Q |
260 |
acaagtgtttttgctaatgcttttctaataatatcaacagggtcttt |
306 |
Q |
| |
|
|||||||||||||| | |||||||||||||| ||||||||||||||| |
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|
| T |
33003102 |
acaagtgtttttgcaattgcttttctaataacatcaacagggtcttt |
33003148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 306
Target Start/End: Complemental strand, 35368856 - 35368810
Alignment:
| Q |
260 |
acaagtgtttttgctaatgcttttctaataatatcaacagggtcttt |
306 |
Q |
| |
|
|||||||||||||| | |||||||||||||| ||||||| ||||||| |
|
|
| T |
35368856 |
acaagtgtttttgcaattgcttttctaataacatcaacaaggtcttt |
35368810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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