View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_low_39 (Length: 298)
Name: NF20570_low_39
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 16749716 - 16749516
Alignment:
| Q |
19 |
catctacccttttatctgaaaaagtgttttgcatattgctctttgtttccaaaagactatcaaattgagaagaaaaagttgattcgactttggattgcac |
118 |
Q |
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|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
16749716 |
catctacccttttatctgaaaaagtgctttgcattttgctctttgtttccaaaagactatcgaattgagaagaaaaagttgattcgactttggattgcac |
16749617 |
T |
|
| Q |
119 |
aaggtcttgttcattcatccgatgaaagtacaaatttagaagacaatggtgataagtacttcatgactttacttcatagatctttctttcaagatatagt |
218 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||| |||||| |
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| T |
16749616 |
aaggtctcgttcattcatccgatgaaagtacaaatttagaagataatggtgataagtacttcttgactttacttcatagatctatctttcaaggtatagt |
16749517 |
T |
|
| Q |
219 |
c |
219 |
Q |
| |
|
| |
|
|
| T |
16749516 |
c |
16749516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 7495099 - 7495295
Alignment:
| Q |
19 |
catctacccttttatctgaaaaagtgttttgcatattgctctttgtttccaaaagactatcaaattgagaagaaaaagttgattcgactttggattgcac |
118 |
Q |
| |
|
|||||||| ||| || |||||||||| ||||| | ||| || |||||||||||||||||| |||||| || | ||| |||||||||||||||||||||| |
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| T |
7495099 |
catctaccatttcatttgaaaaagtgctttgctttttgttcattgtttccaaaagactatttaattgataaaacaaaattgattcgactttggattgcac |
7495198 |
T |
|
| Q |
119 |
aaggtcttgttcattcatccgatgaaagtacaaatttagaagacaatggtgataagtacttcatgactttacttcatagatctttctttcaagatat |
215 |
Q |
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|||| ||||||| ||||| ||||||||||||| ||||||||| | ||||||||||||||||||| |||| |||||| ||||||||||||| |||| |
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|
| T |
7495199 |
aagggtttgttcagtcatctgatgaaagtacaagtttagaagatattggtgataagtacttcatggatttagttcataaatctttctttcaaaatat |
7495295 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 7721712 - 7721517
Alignment:
| Q |
19 |
catctacccttttatctgaaaaagtgttttgcatattgctctttgtttccaaaagactatcaaattgagaagaaaaagttgattcgactttggattgcac |
118 |
Q |
| |
|
|||||||| ||| || |||||||||| ||||| | ||| ||||||||||||||||||||| |||| || || | |||||||||||||||||||||| |
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|
| T |
7721712 |
catctaccatttcatttgaaaaagtgctttgctttttgttctttgtttccaaaagactatttaattccaaaacaaca-ttgattcgactttggattgcac |
7721614 |
T |
|
| Q |
119 |
aaggtcttgttcattcatccgatgaaagtacaaatttagaagacaatggtgataagtacttcatgactttacttcatagatctttctttcaagatat |
215 |
Q |
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|||| ||||||| ||||| ||||||||||||| ||||||||| | ||||||||||||||||||| |||| |||||| ||||||||||||| |||| |
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| T |
7721613 |
aagggtttgttcagtcatcagatgaaagtacaagtttagaagatattggtgataagtacttcatggatttagttcataaatctttctttcaaaatat |
7721517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 7520766 - 7520965
Alignment:
| Q |
19 |
catctacccttttatctgaaaaagtgttttgcatattgctctttgtttccaaaagactatcaaattgagaagaaaaagttgattcgactttggattgcac |
118 |
Q |
| |
|
|||||||| ||| || |||||||||| ||||| | ||| || |||||||||||||||||| ||| | || | || |||||||||||||||||||||| |
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| T |
7520766 |
catctaccatttcatttgaaaaagtgctttgctttttgttcattgtttccaaaagactatttcattcataaaacaacattgattcgactttggattgcac |
7520865 |
T |
|
| Q |
119 |
aaggtcttgttcattcatcc---gatgaaagtacaaatttagaagacaatggtgataagtacttcatgactttacttcatagatctttctttcaagatat |
215 |
Q |
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|||| ||||||| ||||| ||||||||||||| ||||||||| | ||||||||||||||||||| |||| |||||| ||||||||||||| |||| |
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|
| T |
7520866 |
aagggtttgttcagtcatcatcagatgaaagtacaagtttagaagatattggtgataagtacttcatggatttagttcataaatctttctttcaaaatat |
7520965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 7482700 - 7482899
Alignment:
| Q |
19 |
catctacccttttatctgaaaaagtgttttgcatattgctctttgtttccaaaagactatcaaattgagaagaaaaagttgattcgactttggattgcac |
118 |
Q |
| |
|
|||||||| ||| || |||||||||| ||||| | ||| || |||||||||||||||| | |||| || | || |||||||||||||||||||||| |
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| T |
7482700 |
catctaccatttcatttgaaaaagtgctttgctttttgttcattgtttccaaaagactttttaatttgtaaaataacattgattcgactttggattgcac |
7482799 |
T |
|
| Q |
119 |
aaggtcttgttcattcatcc---gatgaaagtacaaatttagaagacaatggtgataagtacttcatgactttacttcatagatctttctttcaagatat |
215 |
Q |
| |
|
|||| ||||||| ||||| ||||||||||||| ||||||||| | ||||||||||||||||||| |||| |||||| ||||||||||||| |||| |
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| T |
7482800 |
aagggtttgttcagtcatcatcagatgaaagtacaagtttagaagatattggtgataagtacttcatggatttagttcataaatctttctttcaaaatat |
7482899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 7128438 - 7128239
Alignment:
| Q |
19 |
catctacccttttatctgaaaaagtgttttgcatattgctctttgtttccaaaagactatcaaattgagaagaaaaagttgattcgactttggattgcac |
118 |
Q |
| |
|
|||||||| ||| || |||||||||| ||||| | ||| || ||||| |||||||||||| |||| || | || ||||||||| |||||||||||| |
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| T |
7128438 |
catctaccatttcatttgaaaaagtgctttgctttttgttcattgttcccaaaagactatttaattcctaaaacaacattgattcgagtttggattgcac |
7128339 |
T |
|
| Q |
119 |
aaggtcttgttcattcatcc---gatgaaagtacaaatttagaagacaatggtgataagtacttcatgactttacttcatagatctttctttcaagatat |
215 |
Q |
| |
|
|||| ||||||| ||||| ||||||||||||| ||||||||| | ||||||||||||||||||| |||| |||||| ||||||||||||| |||| |
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| T |
7128338 |
aagggtttgttcagtcatcatcagatgaaagtacaagtttagaagatattggtgataagtacttcatggatttagttcataaatctttctttcaaaatat |
7128239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 7528816 - 7529015
Alignment:
| Q |
19 |
catctacccttttatctgaaaaagtgttttgcatattgctctttgtttccaaaagactatcaaattgagaagaaaaagttgattcgactttggattgcac |
118 |
Q |
| |
|
|||||||| ||| || |||||||||| ||||| | ||| ||||||||||||||||||||| ||| || | || |||||||||||||||||||||| |
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| T |
7528816 |
catctaccatttcatttgaaaaagtgctttgctttttgttctttgtttccaaaagactatttcattccaaaaacaacattgattcgactttggattgcac |
7528915 |
T |
|
| Q |
119 |
aaggtcttgttcattcatccgatg---aaagtacaaatttagaagacaatggtgataagtacttcatgactttacttcatagatctttctttcaagatat |
215 |
Q |
| |
|
|||| ||||||| ||||| |||| ||||||||| ||||||||| | |||| ||| |||||||||| |||| || ||| ||||||||||||| |||| |
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|
| T |
7528916 |
aagggtttgttcagtcatcagatgatgaaagtacaagtttagaagatattggtcatatgtacttcatggatttagtttataaatctttctttcaaaatat |
7529015 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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