View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20570_low_4 (Length: 564)

Name: NF20570_low_4
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20570_low_4
NF20570_low_4
[»] chr5 (12 HSPs)
chr5 (255-551)||(41343630-41343922)
chr5 (19-105)||(41343321-41343407)
chr5 (173-259)||(41343481-41343567)
chr5 (170-235)||(43129536-43129601)
chr5 (173-237)||(34335337-34335401)
chr5 (170-237)||(37873678-37873745)
chr5 (173-237)||(13166953-13167017)
chr5 (173-237)||(22188698-22188762)
chr5 (173-237)||(42921697-42921761)
chr5 (170-237)||(25663072-25663139)
chr5 (173-232)||(32269840-32269899)
chr5 (179-237)||(23423920-23423978)
[»] scaffold0148 (1 HSPs)
scaffold0148 (170-237)||(33250-33317)
[»] chr4 (12 HSPs)
chr4 (173-237)||(50483239-50483303)
chr4 (173-237)||(600735-600799)
chr4 (170-258)||(56462146-56462233)
chr4 (170-237)||(34107736-34107803)
chr4 (172-259)||(747811-747897)
chr4 (170-257)||(46391355-46391440)
chr4 (173-237)||(55933505-55933567)
chr4 (172-259)||(712635-712721)
chr4 (170-237)||(7536611-7536678)
chr4 (173-236)||(11562899-11562962)
chr4 (173-233)||(12918415-12918475)
chr4 (173-237)||(53619586-53619650)
[»] chr3 (11 HSPs)
chr3 (170-238)||(54508424-54508492)
chr3 (170-259)||(25325008-25325096)
chr3 (173-237)||(51234616-51234680)
chr3 (173-237)||(53785709-53785773)
chr3 (173-237)||(7900858-7900922)
chr3 (173-237)||(52741555-52741619)
chr3 (172-235)||(7502054-7502117)
chr3 (173-259)||(39583272-39583357)
chr3 (173-237)||(44198767-44198831)
chr3 (170-237)||(37133039-37133106)
chr3 (173-237)||(32546795-32546859)
[»] chr7 (18 HSPs)
chr7 (170-237)||(22197986-22198053)
chr7 (170-237)||(22239768-22239835)
chr7 (172-234)||(6635005-6635067)
chr7 (173-237)||(19277293-19277357)
chr7 (174-237)||(43856874-43856937)
chr7 (175-237)||(5972261-5972323)
chr7 (170-259)||(30216098-30216186)
chr7 (173-237)||(982949-983013)
chr7 (173-237)||(21326881-21326945)
chr7 (170-237)||(40726520-40726587)
chr7 (170-238)||(34772781-34772848)
chr7 (173-233)||(47679129-47679189)
chr7 (173-237)||(48539181-48539245)
chr7 (170-237)||(5825273-5825340)
chr7 (174-237)||(27521471-27521534)
chr7 (170-237)||(28517327-28517394)
chr7 (170-237)||(42295224-42295291)
chr7 (173-237)||(4501259-4501322)
[»] chr2 (11 HSPs)
chr2 (173-259)||(18744997-18745082)
chr2 (173-237)||(4413109-4413173)
chr2 (173-237)||(28225000-28225064)
chr2 (172-237)||(13147142-13147207)
chr2 (173-237)||(20142768-20142832)
chr2 (173-237)||(34814862-34814925)
chr2 (173-237)||(41867951-41868015)
chr2 (203-256)||(7760918-7760970)
chr2 (173-233)||(9685458-9685518)
chr2 (173-237)||(17344638-17344702)
chr2 (173-237)||(29808075-29808139)
[»] chr1 (13 HSPs)
chr1 (171-259)||(2898681-2898768)
chr1 (173-259)||(4862032-4862117)
chr1 (173-237)||(29169836-29169900)
chr1 (173-237)||(34644566-34644630)
chr1 (173-233)||(45659691-45659751)
chr1 (171-237)||(28041168-28041234)
chr1 (172-237)||(24177553-24177618)
chr1 (173-237)||(31737366-31737430)
chr1 (170-237)||(21473003-21473070)
chr1 (173-238)||(2764478-2764543)
chr1 (174-235)||(22346897-22346958)
chr1 (174-238)||(16500033-16500097)
chr1 (173-237)||(50314667-50314731)
[»] chr8 (6 HSPs)
chr8 (173-259)||(24125007-24125092)
chr8 (173-258)||(8115792-8115875)
chr8 (170-240)||(8540417-8540487)
chr8 (173-237)||(3187969-3188033)
chr8 (173-259)||(38815273-38815358)
chr8 (173-237)||(8619814-8619878)
[»] chr6 (8 HSPs)
chr6 (174-234)||(959583-959643)
chr6 (173-237)||(33220754-33220818)
chr6 (173-258)||(4165965-4166049)
chr6 (173-237)||(4206639-4206703)
chr6 (172-259)||(28625909-28625995)
chr6 (172-237)||(13398224-13398289)
chr6 (173-237)||(17249348-17249412)
chr6 (173-237)||(34304496-34304560)
[»] scaffold0009 (1 HSPs)
scaffold0009 (173-236)||(103107-103170)
[»] scaffold0490 (1 HSPs)
scaffold0490 (176-237)||(6334-6395)


Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 255 - 551
Target Start/End: Original strand, 41343630 - 41343922
Alignment:
Q  255 gcatactatgtacttagaagtgaggaattacgagttacaacccacatctcgacatatcaaatatctatacaannnnnnnactatgtgagctaaatttact 354  Q
    |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||       |    ||||||||||||||||    
T  41343630 gcatactatgtacttagaagtgaggaattacgagttacaacccgtgtctcgacatatcaaatatctatacaattttttta----gtgagctaaatttact 41343725  T
Q  355 agactaatcgttctctttctaaatagataaacattaaagaaaacaagatattacctatagttccaaccacaatttgccatgtgatttccacaggagccgg 454  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41343726 agactaatcattctctttctaaatagataaacattaaaggaaacaagatattacctatagttccaaccacaatttgccatgtgatttcgacaggagccgg 41343825  T
Q  455 atcaagtactgtggttacatcactcacagacacaacacctatccttgttcttctttttgttgttgttctagcattcttaaccccaaaatcacaggtt 551  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  41343826 atcaagtactgtggttacatcactcacagacacaacacctatccttgttcttctttttgttgttgttcttgcattcttaaccccaaaatcccaggtt 41343922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 41343321 - 41343407
Alignment:
Q  19 gagatagcaataatcaagtnnnnnnngtgacttacaattctcttgctaaattcaatccctgccaccacaaaaggtgtaatcccagct 105  Q
    |||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41343321 gagatagcaataatcaagtaaaaaaagtgacttacaattctcttgctaaattcaatccctgccaccacaaaaggtgtaatcccagct 41343407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 41343481 - 41343567
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 259  Q
    |||||||||||||| ||||||||| |||| ||||||| || |||||||||||| ||||||||||||||||| |||||||||||||||    
T  41343481 ttttataccatttgttttcgacatattcggttttctagcaccagaggttgttggccttctacataatagttcaaaggatcatgcata 41343567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 43129601 - 43129536
Alignment:
Q  170 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctaca 235  Q
    ||||||| ||||||||||||| |||||||||| ||| |||||| |||| ||| |||||||||||||    
T  43129601 tgtttttctaccatttgcttttgacattttcggtttcctaacaccagatgtttttgaccttctaca 43129536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 34335401 - 34335337
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||||||||| ||| |||| |||||| ||||| ||| |||||| |||||||||||||||||    
T  34335401 ttttataccatttgtttttgacactttcgactttctgacaccagaggctgttgaccttctacata 34335337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 37873678 - 37873745
Alignment:
Q  170 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    ||||||||||||||||||||| |||| ||| |  || ||| || ||||||||||||||||||||||||    
T  37873678 tgtttttataccatttgcttttgacacttttggcttcctagcaccagaggttgttgaccttctacata 37873745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 13166953 - 13167017
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||||||||||||| |||| |||||  || ||| ||||||||  |||||||||||||||||    
T  13166953 ttttataccatttgcttttgacactttcggcttcctagcatcagagactgttgaccttctacata 13167017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 22188698 - 22188762
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||| ||||| ||| |||| |||||||||| || || |||||| |||||||||||||||||    
T  22188698 ttttatactatttgtttttgacactttcgattttttagcaccagaggctgttgaccttctacata 22188762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 42921761 - 42921697
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||||||||||||  |||| ||||| ||| ||| || |||||||||||| |||||||||||    
T  42921761 ttttataccatttgcttatgacactttcggtttcctagcaccagaggttgttggccttctacata 42921697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 25663072 - 25663139
Alignment:
Q  170 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    ||||||||||||||||||||| |||| ||||   || ||| ||||||| |||||||| ||||||||||    
T  25663072 tgtttttataccatttgcttttgacactttcagcttcctagcatcagaagttgttgatcttctacata 25663139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 32269840 - 32269899
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttct 232  Q
    |||||||||||||||||| || | ||||||||| ||| ||  ||||||||||||||||||    
T  32269840 ttttataccatttgcttttgatactttcgatttcctagcactagaggttgttgaccttct 32269899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 23423920 - 23423978
Alignment:
Q  179 accatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||||||| |||| |||| | || ||||||||| | |||||||||||||||||||    
T  23423920 accatttgcttttgacactttcaacttcctaacatcaaatgttgttgaccttctacata 23423978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 33317 - 33250
Alignment:
Q  170 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||||||||||| |||| |||||||||| ||| |||||| ||||||||||||||||||||||||    
T  33317 tgtttttataccatttacttttgacattttcggtttcctaacaccagaggttgttgaccttctacata 33250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 50483239 - 50483303
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    ||||||||||||||||||||||| ||||| ||| ||| || ||||||||||||||||||||||||    
T  50483239 ttttataccatttgctttcgacactttcggtttcctagcaccagaggttgttgaccttctacata 50483303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 600735 - 600799
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||||||||||||| | || ||||| ||| |||||| ||||||||||||||||||||||||    
T  600735 ttttataccatttgcttttgtcactttcggtttcctaacaccagaggttgttgaccttctacata 600799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 56462146 - 56462233
Alignment:
Q  170 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcat 258  Q
    ||||||||||||||||| ||| |||| ||| | ||| ||| || ||||||||||||||||||||||| | |||| ||||||||||||||    
T  56462146 tgtttttataccatttgttttagacacttttggtttcctagcaccagaggttgttgaccttctacat-agagttcaaaggatcatgcat 56462233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 34107736 - 34107803
Alignment:
Q  170 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    ||||||||||||||||| ||| |||| ||||||||| ||| || |||||| |||||||||||||||||    
T  34107736 tgtttttataccatttgtttttgacactttcgatttcctagcaccagaggctgttgaccttctacata 34107803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 172 - 259
Target Start/End: Original strand, 747811 - 747897
Alignment:
Q  172 tttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 259  Q
    ||||||||||||||||||| || ||||  | |||  ||| ||||||||||||||||||||||||| | |||||||| | |||||||||    
T  747811 tttttataccatttgcttttgatatttctggtttcttaatatcagaggttgttgaccttctacat-agagtttaaaaggtcatgcata 747897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 170 - 257
Target Start/End: Original strand, 46391355 - 46391440
Alignment:
Q  170 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgca 257  Q
    ||||||||||||||| ||||   ||||||||||||| ||| ||  |||||||||||||||||||||||| |||| ||| |||||||||    
T  46391355 tgtttttataccatt-gcttgtaacattttcgatttcctatcagtagaggttgttgaccttctacataa-agttcaaaagatcatgca 46391440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 55933505 - 55933567
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||||||||||||| |||| |||||| || ||| ||||  |||||||||||||||||||||    
T  55933505 ttttataccatttgcttttgacactttcgacttcctagcatc--aggttgttgaccttctacata 55933567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 259
Target Start/End: Original strand, 712635 - 712721
Alignment:
Q  172 tttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 259  Q
    ||||||||||||||||||| || ||||  | |||  ||| |||||||||||||| |||||||||| | |||||||| | |||||||||    
T  712635 tttttataccatttgcttttgatatttctggtttcttaatatcagaggttgttgtccttctacat-agagtttaaaaggtcatgcata 712721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 7536611 - 7536678
Alignment:
Q  170 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    ||||||||||| ||||| ||| |||| ||||  ||| ||| || ||||||||||||||||||||||||    
T  7536611 tgtttttatacaatttgtttttgacaatttcagtttcctagcaccagaggttgttgaccttctacata 7536678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 11562962 - 11562899
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacat 236  Q
    ||||||| ||||| |||| |||||||||| ||||||||||   ||||||||||| |||||||||    
T  11562962 ttttatatcatttactttagacattttcggttttctaacactcgaggttgttgatcttctacat 11562899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 12918415 - 12918475
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttcta 233  Q
    |||||||| |||| |||| |||| |||||| || ||| |||||||| ||||||||||||||    
T  12918415 ttttatactatttacttttgacactttcgacttcctagcatcagagattgttgaccttcta 12918475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 53619650 - 53619586
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||||||||| ||| |||| ||| || || ||| |||||||||  ||||||||||||||||    
T  53619650 ttttataccatttgtttttgacacttttgacttcctagcatcagaggcagttgaccttctacata 53619586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 54508424 - 54508492
Alignment:
Q  170 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataa 238  Q
    |||||||||| |||||||||| |||||||| ||||||||| || ||||||||||||||||||| |||||    
T  54508424 tgtttttatatcatttgcttttgacatttttgattttctagcaccagaggttgttgaccttctgcataa 54508492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 170 - 259
Target Start/End: Complemental strand, 25325096 - 25325008
Alignment:
Q  170 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 259  Q
    |||||||||||||||||||||| ||| ||||||||| ||| || || || ||||||||||||||||| | |||| ||| |||||||||||    
T  25325096 tgtttttataccatttgctttcaacactttcgatttcctagcaccatagattgttgaccttctacat-agagttcaaatgatcatgcata 25325008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 51234680 - 51234616
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||||||||  ||| |||| |||||| |||||| |||||||||||||||||||||||||||    
T  51234680 ttttataccatttatttttgacactttcgactttctagcatcagaggttgttgaccttctacata 51234616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 53785773 - 53785709
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||||||||||||| |||| ||||| ||| ||| || ||||||||||||||||||||||||    
T  53785773 ttttataccatttgcttttgacactttcggtttcctagcaccagaggttgttgaccttctacata 53785709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 7900922 - 7900858
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||||||||| ||| |||| |||||  || ||| |||||||||||||||||||||||||||    
T  7900922 ttttataccatttgtttttgacactttcggcttcctagcatcagaggttgttgaccttctacata 7900858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 52741555 - 52741619
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||||||||||||| |||| ||| | ||| ||| || ||||||||||||||||||||||||    
T  52741555 ttttataccatttgcttttgacacttttggtttcctagcaccagaggttgttgaccttctacata 52741619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 7502054 - 7502117
Alignment:
Q  172 tttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctaca 235  Q
    |||||||||||||| |||| |||||||| | ||| ||| || ||||||||||||||||||||||    
T  7502054 tttttataccattttcttttgacatttttggtttcctagcaccagaggttgttgaccttctaca 7502117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 39583272 - 39583357
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 259  Q
    ||||||| |||||| |||||||| ||||| ||| ||| ||||| |||||||||||||||| ||| | |||| ||||| |||||||||    
T  39583272 ttttatatcatttgttttcgacactttcggtttcctagcatcataggttgttgaccttctgcat-agagttcaaagggtcatgcata 39583357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 44198831 - 44198767
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||||||||||||| |||| ||||| |||  ||||| | |||| |||||||||||||||||    
T  44198831 ttttataccatttgcttttgacactttcggtttcttaacacccgaggctgttgaccttctacata 44198767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 37133039 - 37133106
Alignment:
Q  170 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    ||||||||||||||||| |||  ||| ||||| |||  || || ||||||||||||||||||||||||    
T  37133039 tgtttttataccatttgttttttacactttcggtttcttagcaccagaggttgttgaccttctacata 37133106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 32546859 - 32546795
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||||||||||||| |||| ||||  ||| ||| || || ||| |||||||||||||||||    
T  32546859 ttttataccatttgcttttgacactttcagtttcctagcaccaaaggctgttgaccttctacata 32546795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 22198053 - 22197986
Alignment:
Q  170 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    ||||||||||||||||||||| | || ||||| ||| ||| |||||||||||||||||||||||||||    
T  22198053 tgtttttataccatttgcttttgtcactttcggtttcctagcatcagaggttgttgaccttctacata 22197986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 22239768 - 22239835
Alignment:
Q  170 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    ||||||||||||||||||||| | || ||||| ||| ||| |||||||||||||||||||||||||||    
T  22239768 tgtttttataccatttgcttttgtcactttcggtttcctagcatcagaggttgttgaccttctacata 22239835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 6635005 - 6635067
Alignment:
Q  172 tttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctac 234  Q
    |||||||| |||||||||| |||| |||||||||| || ||||||||||||||||||||||||    
T  6635005 tttttatatcatttgcttttgacagtttcgattttttagcatcagaggttgttgaccttctac 6635067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 19277357 - 19277293
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||||||||||||| |||| ||||| ||| ||| || ||||||||||||||||||||||||    
T  19277357 ttttataccatttgcttttgacactttcggtttcctagcaccagaggttgttgaccttctacata 19277293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 43856937 - 43856874
Alignment:
Q  174 tttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    ||||||| ||||||||| |||||||| | ||| |||||| ||||||||||||||||||||||||    
T  43856937 tttatacaatttgcttttgacatttttggtttcctaacaccagaggttgttgaccttctacata 43856874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 5972261 - 5972323
Alignment:
Q  175 ttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||||||| ||| |||||||||  |||||||  ||||||||||||||||||||||||||    
T  5972261 ttataccatttgtttttgacattttcatttttctagtatcagaggttgttgaccttctacata 5972323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 170 - 259
Target Start/End: Original strand, 30216098 - 30216186
Alignment:
Q  170 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 259  Q
    ||||||||||||||||||||| |||| ||||| ||| ||| |||||||| ||||||| |||| |||||| |||| ||| | |||||||||    
T  30216098 tgtttttataccatttgcttttgacactttcggtttcctagcatcagagtttgttgatcttccacataa-agttcaaatggtcatgcata 30216186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 983013 - 982949
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||||||||||||| || | ||||| ||||||| || |||||||||||| |||||||||||    
T  983013 ttttataccatttgcttttgatactttcggttttctagcaccagaggttgttggccttctacata 982949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 21326881 - 21326945
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||||||||||||| |||| ||||||||| ||| || |||||| |||||||||| ||||||    
T  21326881 ttttataccatttgcttttgacactttcgatttcctagcaccagaggctgttgaccttttacata 21326945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 40726520 - 40726587
Alignment:
Q  170 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    ||||||||||||||||| ||| |||| |||||  ||  || |||||||||||||||||||||||||||    
T  40726520 tgtttttataccatttgtttttgacactttcggcttcatagcatcagaggttgttgaccttctacata 40726587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 34772848 - 34772781
Alignment:
Q  170 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataa 238  Q
    ||||||||||||||||||||| || | |||| |||| || | || ||||||||||||||||||||||||    
T  34772848 tgtttttataccatttgcttttgaaactttcaattt-cttagattagaggttgttgaccttctacataa 34772781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 47679189 - 47679129
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttcta 233  Q
    |||||||| |||||| || |||||||||| ||| ||| ||||| |||||||||||||||||    
T  47679189 ttttatactatttgcgtttgacattttcggtttcctagcatcacaggttgttgaccttcta 47679129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 48539245 - 48539181
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||||||||||||| |||| ||||| ||||||| || |||||| |||||| | ||||||||    
T  48539245 ttttataccatttgcttttgacactttcggttttctagcaccagaggctgttgatcgtctacata 48539181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 5825340 - 5825273
Alignment:
Q  170 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||||||||||| |||| |||| |||||   | ||| || ||||||||||||||||||||||||    
T  5825340 tgtttttataccatttacttttgacactttcggcatcctagcaccagaggttgttgaccttctacata 5825273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 27521534 - 27521471
Alignment:
Q  174 tttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    ||||||| |||| |||| |||| ||| | ||| ||| |||||||||||||||||||||||||||    
T  27521534 tttatacaatttacttttgacacttttggtttcctagcatcagaggttgttgaccttctacata 27521471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 28517327 - 28517394
Alignment:
Q  170 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    ||||||||||||||||||||| |||| ||| || || ||| ||||||||   ||||||||||||||||    
T  28517327 tgtttttataccatttgcttttgacacttttgacttcctagcatcagagacagttgaccttctacata 28517394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 42295224 - 42295291
Alignment:
Q  170 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    ||||||||||||||||| |||  | | ||||| ||| |||||| ||| ||||||||||||||||||||    
T  42295224 tgtttttataccatttgttttttatactttcggtttcctaacaccaggggttgttgaccttctacata 42295291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 4501322 - 4501259
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||  ||||||||| |||| ||| | ||||||| || ||||||||||||||||||||||||    
T  4501322 ttttatataatttgcttttgacactttgg-ttttctagcaccagaggttgttgaccttctacata 4501259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 18744997 - 18745082
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 259  Q
    |||||||||||||||||| |||||||||||||||||| || || ||| ||||| |||||||||| | |||| ||| |||||||||||    
T  18744997 ttttataccatttgcttttgacattttcgattttctagcaccataggctgttggccttctacat-agagttcaaaagatcatgcata 18745082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 4413109 - 4413173
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||||||||||||| |||| ||||| ||| ||| || ||||| ||||||||||||||||||    
T  4413109 ttttataccatttgcttttgacactttcggtttcctagcaccagagattgttgaccttctacata 4413173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 28225064 - 28225000
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||||||||||||| |||| |||||  || ||| | |||||||||||||||||||||||||    
T  28225064 ttttataccatttgcttttgacactttcggcttcctagcttcagaggttgttgaccttctacata 28225000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 13147142 - 13147207
Alignment:
Q  172 tttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    ||||||||||||||| ||| |||| ||| | |||||||||| ||||| ||||||||||||| ||||    
T  13147142 tttttataccatttgattttgacacttttggttttctaacaccagagattgttgaccttcttcata 13147207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 20142768 - 20142832
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    ||||||||||||| |||| |||| ||| | ||||||| ||||| |||||||||||||| ||||||    
T  20142768 ttttataccattttcttttgacacttttggttttctagcatcaaaggttgttgaccttatacata 20142832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 34814862 - 34814925
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    ||||||||||||||||||||||| |||||  || |||||| |||||  |||||||||||||||||    
T  34814862 ttttataccatttgctttcgacactttcg-gttcctaacaccagagactgttgaccttctacata 34814925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 41867951 - 41868015
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||||||||||||| |||| |||||  || ||| || |||||| |||||||||||||||||    
T  41867951 ttttataccatttgcttttgacactttcgggttcctagcaccagaggctgttgaccttctacata 41868015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 256
Target Start/End: Original strand, 7760918 - 7760970
Alignment:
Q  203 ttttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgc 256  Q
    ||||||| || ||||||||||||||||||||||| | |||| ||||||||||||    
T  7760918 ttttctatcaccagaggttgttgaccttctacat-agagttcaaaggatcatgc 7760970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 9685458 - 9685518
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttcta 233  Q
    |||||||||||||||||| |||| ||| ||||||||| ||  ||||| ||| |||||||||    
T  9685458 ttttataccatttgcttttgacacttttgattttctagcactagaggctgtggaccttcta 9685518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 17344702 - 17344638
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||||||||||||| |||| ||||  ||| ||| || || ||| |||||||||||||||||    
T  17344702 ttttataccatttgcttttgacactttcagtttcctagcaccataggctgttgaccttctacata 17344638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 29808139 - 29808075
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    ||||||||||||||||||  ||||| |  |||| ||| |||| ||||||||||||||| ||||||    
T  29808139 ttttataccatttgcttttcacattatttatttcctagcatcggaggttgttgaccttttacata 29808075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 171 - 259
Target Start/End: Complemental strand, 2898768 - 2898681
Alignment:
Q  171 gtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 259  Q
    |||||||||||||||||||| || | ||||| ||| ||| || ||||||||||||||||||||||| | |||| ||| |||||||||||    
T  2898768 gtttttataccatttgcttttgatactttcggtttcctagcaccagaggttgttgaccttctacat-agagttcaaaagatcatgcata 2898681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 4862032 - 4862117
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 259  Q
    |||||||| ||||||||| |||| ||||||||| |||||| || | |||||||||||||||||| | |||| ||||| |||||||||    
T  4862032 ttttatacaatttgcttttgacactttcgatttcctaacaccaaaagttgttgaccttctacat-agagttcaaagggtcatgcata 4862117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 29169836 - 29169900
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||||||||||||| |||| ||||| ||| ||| || ||||||||||| ||||||||||||    
T  29169836 ttttataccatttgcttttgacactttcggtttcctagcaccagaggttgttaaccttctacata 29169900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 34644630 - 34644566
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||||||||| ||| |||| |||||  || ||| |||||||||||||||||||||||||||    
T  34644630 ttttataccatttgtttttgacactttcggcttcctagcatcagaggttgttgaccttctacata 34644566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 45659691 - 45659751
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttcta 233  Q
    |||||||||||||||||| |||| ||||||||| ||| || |||||| |||||||||||||    
T  45659691 ttttataccatttgcttttgacactttcgatttcctatcaccagaggctgttgaccttcta 45659751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 237
Target Start/End: Original strand, 28041168 - 28041234
Alignment:
Q  171 gtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||||||||||||||| |||| ||||| ||| ||| || ||||||  ||||||||||||||||    
T  28041168 gtttttataccatttgcttttgacactttcggtttcctagcaccagaggcggttgaccttctacata 28041234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 24177553 - 24177618
Alignment:
Q  172 tttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    ||||||||||||||| ||| |||| ||||| ||| ||| ||||||||| |||| ||||||||||||    
T  24177553 tttttataccatttgtttttgacagtttcggtttcctagcatcagaggctgtttaccttctacata 24177618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 31737366 - 31737430
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||||||||| ||| |||| ||||||||||||| ||| ||||| | ||||| |||||||||    
T  31737366 ttttataccatttgtttttgacactttcgattttctagcattagaggctattgacattctacata 31737430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 21473070 - 21473003
Alignment:
Q  170 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    ||||||||||||||||||||| |||| || |  ||| ||| || |||||| |||||||||||||||||    
T  21473070 tgtttttataccatttgcttttgacacttgcagtttcctagcaccagaggctgttgaccttctacata 21473003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 2764543 - 2764478
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataa 238  Q
    |||||| |||||| |||| |||| ||||   || ||| ||||||||||||||||||||||||||||    
T  2764543 ttttatgccattttcttttgacactttcagcttcctagcatcagaggttgttgaccttctacataa 2764478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 22346958 - 22346897
Alignment:
Q  174 tttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctaca 235  Q
    |||||||| |||||||| |||| ||||| ||| |||  | ||||||||||||||||||||||    
T  22346958 tttataccttttgcttttgacactttcggtttcctagtagcagaggttgttgaccttctaca 22346897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 16500097 - 16500033
Alignment:
Q  174 tttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataa 238  Q
    ||||||| ||||||||| |||| ||| || || ||| ||| ||||| ||||||||||||||||||    
T  16500097 tttatactatttgcttttgacacttttgacttcctagcattagaggctgttgaccttctacataa 16500033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 50314667 - 50314731
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    ||||||||||||| |||| ||||||||  |||| ||||||  ||| ||||||||| |||||||||    
T  50314667 ttttataccatttacttttgacattttttatttcctaacacaagatgttgttgactttctacata 50314731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 24125092 - 24125007
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 259  Q
    |||||||||||||||||| |||| ||| ||||| ||| || |||||||||||| |||||||||||| |||| ||| | |||||||||    
T  24125092 ttttataccatttgcttttgacaattttgatttcctagcaccagaggttgttggccttctacataa-agttcaaaaggtcatgcata 24125007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 258
Target Start/End: Complemental strand, 8115875 - 8115792
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcat 258  Q
    ||||||||||||||| || |||| ||| | |||| ||| || |||||||||||||||||||||||| |||| ||||||||||||||    
T  8115875 ttttataccatttgcatttgacacttttggttttttaa-atgagaggttgttgaccttctacataa-agttcaaaggatcatgcat 8115792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 8540417 - 8540487
Alignment:
Q  170 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataata 240  Q
    |||||||||  ||| ||| || |||| |||| | |||||||||||||||||||||||| ||||||||||||    
T  8540417 tgtttttatgtcatctgcatttgacactttcaactttctaacatcagaggttgttgactttctacataata 8540487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 3188033 - 3187969
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||||||||||||| || | |||||  || ||| |||||||||||||| ||||||||||||    
T  3188033 ttttataccatttgcttttgaaactttcggcttcctagcatcagaggttgttaaccttctacata 3187969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 38815358 - 38815273
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 259  Q
    |||||||||||||||||| |||| ||||   || ||| || |||||| |||||||||||||||| | |||| ||||| |||||||||    
T  38815358 ttttataccatttgcttttgacactttccgcttcctagcaccagagggtgttgaccttctacat-agagttcaaagggtcatgcata 38815273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 8619878 - 8619814
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||||||||| |||  ||||||| |  ||||||||| |||||||||||||| ||| |||||    
T  8619878 ttttataccatttgtttttaacatttttggctttctaacaccagaggttgttgactttcgacata 8619814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 959643 - 959583
Alignment:
Q  174 tttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctac 234  Q
    ||||||||||||| ||| |||||||||| ||| ||| || |||||||||||||||||||||    
T  959643 tttataccatttgtttttgacattttcggtttcctagcaccagaggttgttgaccttctac 959583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 33220754 - 33220818
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||||||||||||| |||| |||||  || ||| |||| ||||||||||||||||||||||    
T  33220754 ttttataccatttgcttttgacactttcggcttcctagcatccgaggttgttgaccttctacata 33220818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 4165965 - 4166049
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcat 258  Q
    ||||||| |||||||||| |||| |||||  || ||| || ||||||||||||||||||||||| | |||||||| | ||||||||    
T  4165965 ttttatatcatttgcttttgacactttcgggttcctagcaccagaggttgttgaccttctacat-agagtttaaaaggtcatgcat 4166049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 4206639 - 4206703
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    ||||||| |||||||||| |||| |||||  || ||| || ||||||||||||||||||||||||    
T  4206639 ttttatatcatttgcttttgacactttcgggttcctagcaccagaggttgttgaccttctacata 4206703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 259
Target Start/End: Complemental strand, 28625995 - 28625909
Alignment:
Q  172 tttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 259  Q
    ||||||||||||||| |||  ||| |||| |||| ||| || ||||||||||||| ||||||||||| |||| ||| | |||||||||    
T  28625995 tttttataccatttgttttttacactttcaatttcctagcaccagaggttgttgagcttctacataa-agttcaaaaggtcatgcata 28625909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 13398224 - 13398289
Alignment:
Q  172 tttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    ||||||||| |||| |||| || ||||| || || ||||||||||| ||||||||| |||||||||    
T  13398224 tttttatactatttacttttgatatttttgacttcctaacatcagaagttgttgacattctacata 13398289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 17249348 - 17249412
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||||||||||||| |||| ||| |  || ||| |||||||||  ||||||||||||||||    
T  17249348 ttttataccatttgcttttgacacttttggcttcctagcatcagaggcagttgaccttctacata 17249412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 34304560 - 34304496
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    |||||||||||||||||| |||| ||| |  || ||| ||||||| | |||||||||||||||||    
T  34304560 ttttataccatttgcttttgacactttgggcttcctagcatcagatgatgttgaccttctacata 34304496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 103170 - 103107
Alignment:
Q  173 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacat 236  Q
    |||||||||||||||||| |||| ||||| ||| ||| || |||||| ||||||||||||||||    
T  103170 ttttataccatttgcttttgacactttcggtttcctagcaccagaggctgttgaccttctacat 103107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 237
Target Start/End: Complemental strand, 6395 - 6334
Alignment:
Q  176 tataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 237  Q
    ||||||||||||||| |||| ||||  ||| ||| || |||||| |||||||||||||||||    
T  6395 tataccatttgcttttgacactttcagtttcctagcaccagaggctgttgaccttctacata 6334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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