View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20570_low_40 (Length: 298)
Name: NF20570_low_40
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_low_40 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 35902368 - 35902645
Alignment:
| Q |
1 |
aatatctttagagtactctggatgaccttggattcccataatatgatctccatatttaaacatctcaattccagttttatctgacctagcaattacctct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35902368 |
aatatctttagagtactctggatgaccttggattcccataatatgatctccatatttaaacatctcaattccagttttatctgacctagcaattacctct |
35902467 |
T |
|
| Q |
101 |
gcctttgcaggtaactcttgaatctaatttgataaaatagcacaagtataacccatcaattactattatatattatgataaaaaatatttgaggctatgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
35902468 |
gcctttgcaggtaactcttgaatctaatttgataaaatagcacaagtataa-ccatcaattactattatatattatgataaaaaatatttgaggctatag |
35902566 |
T |
|
| Q |
201 |
taactttttatgtatgtatacctcatccctgtggcattcgattatagaaagctttgttggaagatcaagagaagggaag |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35902567 |
taactttttatgtatgtatacctcatccctgtggcattcgattatggaaagctttgttggaagatcaagagaagggaag |
35902645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 118
Target Start/End: Complemental strand, 37024561 - 37024448
Alignment:
| Q |
5 |
tctttagagtactctggatgaccttggattcccataatatgatctccatatttaaacatctcaattccagttttatctgacctagcaattacctctgcct |
104 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||| |||||||| ||||||| || || |||| |
|
|
| T |
37024561 |
tctttagagtactcaggatgaccttgaattcccataatgtgatctccatatctaaacatctcaattccagtcttatctgatttagcaatcacttcagcct |
37024462 |
T |
|
| Q |
105 |
ttgcaggtaactct |
118 |
Q |
| |
|
| ||||||| |||| |
|
|
| T |
37024461 |
tggcaggtagctct |
37024448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 37024309 - 37024253
Alignment:
| Q |
218 |
atacctcatccctgtggcattcgattatagaaagctttgttggaagatcaagagaag |
274 |
Q |
| |
|
||||||||||||| ||||||| || || |||||||| |||||||| |||||||||| |
|
|
| T |
37024309 |
atacctcatccctatggcattgaataatggaaagcttcgttggaagttcaagagaag |
37024253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 2051979 - 2052055
Alignment:
| Q |
26 |
ccttggattcccataatatgatctccatatttaaacatctcaattccagttttatctgacctagcaattacctctgc |
102 |
Q |
| |
|
|||||||| |||| || |||| |||||| ||||||||||||||||||| || ||||||| | ||||||||||||| |
|
|
| T |
2051979 |
ccttggatgcccaacatgtgatttccatacctaaacatctcaattccagtcttttctgaccaaccaattacctctgc |
2052055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University