View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_low_41 (Length: 293)
Name: NF20570_low_41
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 7 - 288
Target Start/End: Original strand, 3202995 - 3203276
Alignment:
| Q |
7 |
atgatcttcttgttacaaatcctctcccctgtgaattcacaatggccattccattttgcaggtggagaaggcattccctcatcggaaaaggaaggatgtg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3202995 |
atgatcttcttgttacaaatcctctcccctgtgaattcacaatggccattccattttgcaggtggagaaggcattccctcatcggaaaaggaaggatgtg |
3203094 |
T |
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| Q |
107 |
agagggttattcctgtgtccagcattccaattatgatccctttaccttgattggaatttccccacaattcttgattctgttgcaaccccaagaagcttgg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3203095 |
agagggttattcctgtgtccagcattccaattatgatccctttaccttgattggaatttccccacaattcttgattctgttgcaaccccaagaagcttgg |
3203194 |
T |
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| Q |
207 |
agtgtgagttgtgtgcaatgagaaaatcttttccggtcgaattgacagaacctcctcattctcttctagaacctttgcttct |
288 |
Q |
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||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3203195 |
agtgtgagttgtgtgtaatgagaaaatcttttctggtcgaattgacagaacctcctcattctcttctagaaccttggcttct |
3203276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 287
Target Start/End: Original strand, 3208969 - 3209249
Alignment:
| Q |
7 |
atgatcttcttgttacaaatcctctcccctgtgaattcacaatggccattccattttgcaggtggagaaggcattccctcatcggaaaaggaaggatgtg |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| |
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| T |
3208969 |
atgatcttcttgttacaaatcctctcccctgtgaattcacaatggccattccattttgcaggtggtgaaggcatcccctcatcagaaaaggaaggatgtg |
3209068 |
T |
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| Q |
107 |
agagggttattcctgtgtccagcattccaattatgatccctttaccttgattggaatttccccacaattcttgattctgttgcaaccccaagaagcttgg |
206 |
Q |
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| T |
3209069 |
agagggttattcctgtgtcgacgattccaattatgatccctttaccttgattggaatttccccacaagtcttgattttgttgtaaccccaagaagcttga |
3209168 |
T |
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| Q |
207 |
agtgtgagttgtgtgcaatgagaaaatcttttccggtcgaattgacagaacctcctcattctcttctagaacctttgcttc |
287 |
Q |
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||||||||||||||| ||||| | || || ||| | ||| |||| |||||||||||||||||||||||| |||| ||||| |
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| T |
3209169 |
agtgtgagttgtgtgtaatgaatacattttctccagccgagttgatagaacctcctcattctcttctagagccttggcttc |
3209249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 7 - 288
Target Start/End: Original strand, 3216917 - 3217198
Alignment:
| Q |
7 |
atgatcttcttgttacaaatcctctcccctgtgaattcacaatggccattccattttgcaggtggagaaggcattccctcatcggaaaaggaaggatgtg |
106 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||||||||| | |
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| T |
3216917 |
atgagcttcttgttacaaatcctttcccctgtgaattcacagtggccattccattttgcaggtggagagggcattccctcgtcagaaaaggaaggatggg |
3217016 |
T |
|
| Q |
107 |
agagggttattcctgtgtccagcattccaattatgatccctttaccttgattggaatttccccacaattcttgattctgttgcaaccccaagaagcttgg |
206 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| ||| ||||| ||||||||||||||||||||||||| |
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| T |
3217017 |
agagggatattcctgtgtccaggattccaattatgatccctttaccgagattggaatttatccataatccttgactctgttgcaaccccaagaagcttgg |
3217116 |
T |
|
| Q |
207 |
agtgtgagttgtgtgcaatgagaaaatcttttccggtcgaattgacagaacctcctcattctcttctagaacctttgcttct |
288 |
Q |
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||||||||||| || ||||||| || ||||| ||||||||||| ||||||||||| |||||||||||| |||| |||||| |
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| T |
3217117 |
tgtgtgagttgtatgtaatgagaggatgttttctggtcgaattgatagaacctcctccttctcttctagagccttggcttct |
3217198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 3232106 - 3232140
Alignment:
| Q |
37 |
gtgaattcacaatggccattccattttgcaggtgg |
71 |
Q |
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||||||||||||||||| ||||||||||||||||| |
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| T |
3232106 |
gtgaattcacaatggcctttccattttgcaggtgg |
3232140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 3177934 - 3177901
Alignment:
| Q |
38 |
tgaattcacaatggccattccattttgcaggtgg |
71 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
3177934 |
tgaattcacaatggcctttccattttgcaggtgg |
3177901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 3221873 - 3221926
Alignment:
| Q |
37 |
gtgaattcacaatggccattccattttgcaggtggagaaggcattccctcatcg |
90 |
Q |
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|||||||| |||||||| ||||||||||||||||| | |||||||| |||||| |
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| T |
3221873 |
gtgaattcgcaatggcctttccattttgcaggtggtggcggcattccttcatcg |
3221926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 3240906 - 3240939
Alignment:
| Q |
38 |
tgaattcacaatggccattccattttgcaggtgg |
71 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
3240906 |
tgaattcacaatggcctttccattttgcaggtgg |
3240939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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