View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20570_low_43 (Length: 284)

Name: NF20570_low_43
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20570_low_43
NF20570_low_43
[»] chr3 (2 HSPs)
chr3 (19-277)||(17682310-17682572)
chr3 (19-277)||(19766584-19766823)
[»] chr6 (4 HSPs)
chr6 (97-244)||(15434073-15434219)
chr6 (89-158)||(10093072-10093141)
chr6 (89-158)||(33044884-33044953)
chr6 (23-86)||(15434298-15434361)
[»] chr4 (4 HSPs)
chr4 (89-258)||(22292033-22292201)
chr4 (23-86)||(22292289-22292352)
chr4 (103-158)||(29862802-29862857)
chr4 (58-90)||(7135469-7135501)
[»] scaffold0045 (1 HSPs)
scaffold0045 (89-158)||(11072-11141)
[»] chr8 (3 HSPs)
chr8 (89-158)||(5658370-5658439)
chr8 (89-158)||(14677460-14677529)
chr8 (89-158)||(31100310-31100379)
[»] scaffold0035 (1 HSPs)
scaffold0035 (90-158)||(35676-35744)


Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 277
Target Start/End: Original strand, 17682310 - 17682572
Alignment:
Q  19 aaagaagccatggaaatttgcaatctcgattggaagctcccgtcgttgctctctcccttcatcaacaatgctctcagggtaatcgcttttccctttctat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  17682310 aaagaagccatggaaatttgcaatctcgattggaagctcccgtcgttgctctctcccttcatcaacaatgctctcaaggtaatcgtttttccctttctat 17682409  T
Q  119 gaaatgaattgtgttttgagtttaatcactatccacctctca----gttgtttcttcaattccattcattattgttaataaatttgcaattaggttcaca 214  Q
    ||| |||||||||||||||| ||||||||| |||||||||||     ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17682410 gaattgaattgtgttttgagattaatcactctccacctctcaatatattgtttcttcaattccattcattattggtaataaatttgcaattaggttcaca 17682509  T
Q  215 acataatcagatttaggtctctgacgagaataaggtcatagttggcgattcagtttcatctca 277  Q
    ||| | |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  17682510 acacagtcagatttgggtctctgacgagaatagggtcatagttgacgattcagtttcatctca 17682572  T

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Target: chr3; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 19 - 277
Target Start/End: Original strand, 19766584 - 19766823
Alignment:
Q  19 aaagaagccatggaaatttgcaatctcgattggaagctcccgtcgttgctctctcccttcatcaacaatgctctcagggtaatcgcttttccctttctat 118  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  19766584 aaagaagccatggaaatttgcaatctcgattggaagctcctgtcgttgctctctccattcatcaacaatgctctcaaggtaatcgcttttccctttctat 19766683  T
Q  119 gaaatgaattgtgttttgagtttaat--cactatccacctctcagttgtttcttcaattccattcattattgttaataaatttgcaattaggttcacaac 216  Q
    ||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||                     |||||||||||||    
T  19766684 gaaatgaattgtgttttgagtttaatcacactctccacctctcagttgtttcttcaattccattca---------------------ttaggttcacaac 19766762  T
Q  217 ataatcagatttaggtctctgacgagaataaggtcatagttggcgattcagtttcatctca 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19766763 ataatcagatttaggtctctgacgagaataaggtcatagttggcgattcagtttcatctca 19766823  T

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Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 97 - 244
Target Start/End: Complemental strand, 15434219 - 15434073
Alignment:
Q  97 gtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctctcagttgtttcttcaattccattcattattgttaataaa 196  Q
    ||||||||||||||||||||| | | ||||||||||||| ||| |||||||  |||||||||||||||||||||||||||||||||||| | ||  ||||    
T  15434219 gtaatcgcttttccctttctacgtattgaattgtgtttttagtctaatcaccctccacctctcagttgtttcttcaattccattcattaat-tttgtaaa 15434121  T
Q  197 tttgcaattaggttcacaacataatcagatttaggtctctgacgagaa 244  Q
    ||||||||||| ||||||||| |||||||||| ||||||||| |||||    
T  15434120 tttgcaattagattcacaacagaatcagatttgggtctctgatgagaa 15434073  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 158
Target Start/End: Original strand, 10093072 - 10093141
Alignment:
Q  89 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctct 158  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||    
T  10093072 ctctcaaggtaatagcttttccctttctatgaattgaattgtgttttgagtctaatcactctccacctct 10093141  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 33044953 - 33044884
Alignment:
Q  89 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctct 158  Q
    |||||| |||||| |||||||| |||||||||| ||||||||||||||||| |||||||| |||||||||    
T  33044953 ctctcaaggtaatagcttttccttttctatgaattgaattgtgttttgagtctaatcactctccacctct 33044884  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 15434361 - 15434298
Alignment:
Q  23 aagccatggaaatttgcaatctcgattggaagctcccgtcgttgctctctcccttcatcaacaa 86  Q
    ||||||||||||||||||||||| | |||  |||||| ||||||||||||||||||||||||||    
T  15434361 aagccatggaaatttgcaatctcaagtgggggctcccatcgttgctctctcccttcatcaacaa 15434298  T

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Target: chr4 (Bit Score: 82; Significance: 9e-39; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 89 - 258
Target Start/End: Complemental strand, 22292201 - 22292033
Alignment:
Q  89 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctctcagttgtttcttcaattccattcattattg 188  Q
    |||||| |||||||||||||||||||||||| | ||||||||||||| ||| |||| ||| |||||||||||||||||||||||||| ||||||||| |     
T  22292201 ctctcaaggtaatcgcttttccctttctatgtattgaattgtgtttttagtctaattactctccacctctcagttgtttcttcaattgcattcattaat- 22292103  T
Q  189 ttaataaatttgcaattaggttcacaacataatcagatttaggtctctgacgagaataaggtcatagttg 258  Q
    ||  ||||||||||||||| ||||||||| ||||| |||| || |||||| ||||| | ||| |||||||    
T  22292102 tttgtaaatttgcaattagattcacaacacaatcacatttggggctctgatgagaacagggtaatagttg 22292033  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 22292352 - 22292289
Alignment:
Q  23 aagccatggaaatttgcaatctcgattggaagctcccgtcgttgctctctcccttcatcaacaa 86  Q
    ||||||||||||||||||||||| | |||| |||||| |||||||||||||| |||||||||||    
T  22292352 aagccatggaaatttgcaatctcaagtggaggctcccatcgttgctctctccgttcatcaacaa 22292289  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 158
Target Start/End: Complemental strand, 29862857 - 29862802
Alignment:
Q  103 gcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctct 158  Q
    ||||||| ||||||||||| ||||||||||| ||||| |||||||| |||||||||    
T  29862857 gcttttctctttctatgaattgaattgtgttatgagtctaatcactctccacctct 29862802  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 7135469 - 7135501
Alignment:
Q  58 ccgtcgttgctctctcccttcatcaacaatgct 90  Q
    |||||||| ||||||||||||||||||||||||    
T  7135469 ccgtcgtttctctctcccttcatcaacaatgct 7135501  T

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Target: scaffold0045 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 11141 - 11072
Alignment:
Q  89 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctct 158  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||    
T  11141 ctctcaaggtaatagcttttccctttctatgaattgaattgtgttttgagtctaatcactctccacctct 11072  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 158
Target Start/End: Original strand, 5658370 - 5658439
Alignment:
Q  89 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctct 158  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||    
T  5658370 ctctcaaggtaatagcttttccctttctatgaattgaattgtgttttgagtctaatcactctccacctct 5658439  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 14677529 - 14677460
Alignment:
Q  89 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctct 158  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||| |||||  ||||||| |||||||||    
T  14677529 ctctcaaggtaatagcttttccctttctatgaattgaattgtgttctgagtccaatcactctccacctct 14677460  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 31100379 - 31100310
Alignment:
Q  89 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctct 158  Q
    |||||| |||||| |||||| | |||||||||| ||||||||||||||||| |||||||| |||||||||    
T  31100379 ctctcaaggtaatagctttttcttttctatgaattgaattgtgttttgagtctaatcactctccacctct 31100310  T

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Target: scaffold0035 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 158
Target Start/End: Original strand, 35676 - 35744
Alignment:
Q  90 tctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctct 158  Q
    ||||| |||||| ||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||    
T  35676 tctcaaggtaatagcttttccctttctatgaattgaattgtgttctgagtctaatcactctccacctct 35744  T

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