View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_low_45 (Length: 282)
Name: NF20570_low_45
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 47911217 - 47910970
Alignment:
| Q |
1 |
ctttccatctcaattgcattgacgtttggctccgttcaaacgctagctgtcctgtatgtcgctcctgtcttgttgaggaggactatctgcccgaatgctc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
47911217 |
ctttccatctcaattgcattgacgtttggctccgttcaaacgctagctgtcctgtatgtcgctcctgtcttgttgaggaggactatctgaccaaatgctc |
47911118 |
T |
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| Q |
101 |
taatgcatctagttcccaacggatcttgtcgttggagagaatggtcgtcatcgacatccctgccaccacatcaccatcgtagtatcaagcaaactgaggt |
200 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
47911117 |
taatgcatctagttcccagcggaccttgtcgttggagagaatggtcgtcatcgacatccctgccaccacatcaccatcgtagtatcaagccaactgaggt |
47911018 |
T |
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| Q |
201 |
gcagtaatccagaggcgttacgttgttgtgcttgagctacgaacataatgtta |
253 |
Q |
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| T |
47911017 |
gcagtaatccagagg-----cgttgttgtgccagagctacgaacatagtgtta |
47910970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 47916111 - 47915905
Alignment:
| Q |
12 |
aattgcattgacgtttggctccgttcaaacgctagctgtcctgtatgtcgctcctgtcttgttgaggaggactatctgcccgaatgctctaatgcatcta |
111 |
Q |
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| T |
47916111 |
aattgcattgttgtttggcttcgtttaaaccctaactgtcctatatgtcactc-tatcttgttgaggagggctatctgcccaaacgctctaatgcatcta |
47916013 |
T |
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| Q |
112 |
gttcccaacggatcttgtcgttggagagaatggtcgtcatcgacatccctgccaccacatcaccatcgtagtatcaagcaaactgaggtgcagtaatcca |
211 |
Q |
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| T |
47916012 |
gttcccagcggacattgtcatcggagagaatggtcgtcatcgacacccctaccaccacatccccattgtagtatcaagccaactaaggtgcagtggtcca |
47915913 |
T |
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| Q |
212 |
gaggcgtt |
219 |
Q |
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|||||||| |
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| T |
47915912 |
gaggcgtt |
47915905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 47899372 - 47899182
Alignment:
| Q |
1 |
ctttccatctcaattgcattgacgtttggctccgttcaaacgctagctgtcctgtatgtcgctcctgtcttg------ttgaggaggactatctgcccga |
94 |
Q |
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|||||||||||||||| || ||||||||||| ||||||||| |||| |||||| | |||||||| |||||| | |||||||||| | || | |
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| T |
47899372 |
ctttccatctcaattgtatcgacgtttggcttcgttcaaaccctagttgtcctttgtgtcgctcatgtctttactttttcgaggaggactttatgttgaa |
47899273 |
T |
|
| Q |
95 |
atgctctaatgcatctagttcccaacggatcttgtcgttggagagaatggtcgtcatcgacatccctgccaccacatcaccatcgtagtat |
185 |
Q |
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| T |
47899272 |
acgctctaatgcatctggttccgagcggagcttgtcgcccgagagaatggttatcatcgacatccctgccaccgcatccccatcgtagtat |
47899182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 47906038 - 47905986
Alignment:
| Q |
13 |
attgcattgacgtttggctccgttcaaacgctagctgtcctgtatgtcgctcc |
65 |
Q |
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| T |
47906038 |
attgcattgatgtttggcttcgttcaaacactaactgtcctctatgtcgctcc |
47905986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 47908810 - 47908758
Alignment:
| Q |
13 |
attgcattgacgtttggctccgttcaaacgctagctgtcctgtatgtcgctcc |
65 |
Q |
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| T |
47908810 |
attgcattgatgtttggcttcgttcaaacactaactgtcctctatgtcgctcc |
47908758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 47899134 - 47899089
Alignment:
| Q |
174 |
ccatcgtagtatcaagcaaactgaggtgcagtaatccagaggcgtt |
219 |
Q |
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| T |
47899134 |
ccattgtagtatcaagccagctgaggtgcagtgatccagaggcgtt |
47899089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 31209665 - 31209855
Alignment:
| Q |
1 |
ctttccatctcaattgcattgacgtttggctccgttcaaacgctagctgtcctgtatgtcgctcctgtc------ttgttgaggaggactatctgcccga |
94 |
Q |
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|||||||||||||||| |||||||||||||| ||||| ||| ||||||||||| | |||||||| |||| || | |||||||||| | || | |
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| T |
31209665 |
ctttccatctcaattgtattgacgtttggcttcgttctaaccctagctgtcctttgtgtcgctcatgtctttactttttcgaggaggactttatgttgaa |
31209764 |
T |
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| Q |
95 |
atgctctaatgcatctagttcccaacggatcttgtcgttggagagaatggtcgtcatcgacatccctgccaccacatcaccatcgtagtat |
185 |
Q |
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| T |
31209765 |
acgctctaatgcatctggttccgagcggagcttgtcgcctgagagaatggttgtcattgacatccctgccaccgcatccccatggtagtat |
31209855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 31209908 - 31209948
Alignment:
| Q |
179 |
gtagtatcaagcaaactgaggtgcagtaatccagaggcgtt |
219 |
Q |
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| T |
31209908 |
gtagtatcaagccagctgaggtgcagtgatccagaggcgtt |
31209948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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