View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_low_46 (Length: 279)
Name: NF20570_low_46
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_low_46 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 10553932 - 10553656
Alignment:
| Q |
18 |
tgaagaaacactatgatcaaaccttgatcaagacatctcctagttatgtaaatagaccataatacattcttnnnnnnn-----tgaataaatataaaatt |
112 |
Q |
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| T |
10553932 |
tgaagaaacactatgaccaaaccttgatcaagacatctcctagttatgtaaacagaccataatacattctttaaaaaaaaaaatgaataaatataaaatt |
10553833 |
T |
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| Q |
113 |
ataagatcttgatcatttcaagataatagagaaaatacactacataacaatatctttcaaatcaatgaaaaaattga--------------------aat |
192 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
10553832 |
ataagatcttgatcatttcaagataatagagaaaatacactacataacaatatctttcaaatcaatgaaaaaattgaagagaatgaatgaactttgtaat |
10553733 |
T |
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| Q |
193 |
actttaccttgatttgtaggttgagatggttcttgtttctccataaacaaaggtgatggtgaagcttctttcctttg |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10553732 |
actttaccttgatttgtaggttgagatggttcttgtttctccataaacaaaggtgatggtgaagcttctttcctttg |
10553656 |
T |
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