View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_low_48 (Length: 272)
Name: NF20570_low_48
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_low_48 |
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| [»] scaffold0097 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 30 - 257
Target Start/End: Original strand, 2364992 - 2365208
Alignment:
| Q |
30 |
ttgtgtgttcaatacattaaaagtttaatttttatgttttccatacaaaaattatcttttaattccctttttaccttcttaatttatgttcatgactcat |
129 |
Q |
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| T |
2364992 |
ttgtgtgttcaatacattaaaagtttaatttttatgttttccatacaaaaattatcttttaattccctttttagcttcttaatttatgttcatgactcat |
2365091 |
T |
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| Q |
130 |
actataaatataaccaagcatattttttaaaatatttaggattgaaactcgcattcttatattttcaaaaaagttattctagaaaataaatatatagtca |
229 |
Q |
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| T |
2365092 |
aatataaatataaccaagcatatttttaaaaatatttaggattgaaactcgcattcttatattttcaaaaaagttattctagaa-----------agtca |
2365180 |
T |
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| Q |
230 |
agcatttttaatgtcttttattgaatgt |
257 |
Q |
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| T |
2365181 |
agcatttttaatgtcttttattgaatgt |
2365208 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 45984277 - 45984224
Alignment:
| Q |
58 |
tttttatgttttccatacaaaaattatcttttaattccctttttaccttcttaa |
111 |
Q |
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| T |
45984277 |
tttttatcttttcaatacaaaagtcatcttttatttccctttttaacttcttaa |
45984224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 46896 - 46856
Alignment:
| Q |
71 |
catacaaaaattatcttttaattccctttttaccttcttaa |
111 |
Q |
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| T |
46896 |
catacataaattatcttttaattccccttttaacttcttaa |
46856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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