View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20570_low_5 (Length: 552)

Name: NF20570_low_5
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20570_low_5
NF20570_low_5
[»] chr3 (12 HSPs)
chr3 (213-538)||(51329742-51330073)
chr3 (173-294)||(27186088-27186209)
chr3 (12-65)||(51329557-51329610)
chr3 (179-246)||(9557414-9557481)
chr3 (217-288)||(27189035-27189106)
chr3 (179-310)||(47867526-47867656)
chr3 (228-278)||(16868966-16869016)
chr3 (232-312)||(30288161-30288241)
chr3 (12-65)||(37267778-37267831)
chr3 (234-310)||(24398555-24398631)
chr3 (161-192)||(51329706-51329737)
chr3 (196-244)||(11232720-11232768)
[»] scaffold0039 (1 HSPs)
scaffold0039 (161-288)||(106783-106910)
[»] chr4 (10 HSPs)
chr4 (201-316)||(10311403-10311518)
chr4 (201-312)||(49815706-49815817)
chr4 (12-65)||(48093517-48093570)
chr4 (225-313)||(43036466-43036554)
chr4 (173-311)||(14968405-14968543)
chr4 (12-65)||(2333036-2333089)
chr4 (231-312)||(43035765-43035846)
chr4 (205-251)||(21410128-21410174)
chr4 (227-312)||(19438324-19438409)
chr4 (228-276)||(17482702-17482750)
[»] chr7 (10 HSPs)
chr7 (161-310)||(15336393-15336542)
chr7 (230-309)||(35612003-35612082)
chr7 (202-288)||(15901092-15901178)
chr7 (12-65)||(42026098-42026151)
chr7 (225-310)||(47317779-47317864)
chr7 (201-276)||(13954067-13954142)
chr7 (179-242)||(16798654-16798717)
chr7 (172-248)||(3614443-3614520)
chr7 (12-65)||(15336660-15336713)
chr7 (260-309)||(27870303-27870352)
[»] chr6 (3 HSPs)
chr6 (227-310)||(32132804-32132887)
chr6 (226-310)||(7822331-7822415)
chr6 (433-479)||(33527637-33527683)
[»] chr2 (10 HSPs)
chr2 (170-244)||(26173115-26173189)
chr2 (12-65)||(44073211-44073264)
chr2 (173-210)||(21831124-21831161)
chr2 (172-244)||(21833902-21833974)
chr2 (201-247)||(33403074-33403120)
chr2 (234-283)||(31173408-31173457)
chr2 (227-312)||(33405769-33405854)
chr2 (227-283)||(31184456-31184512)
chr2 (175-274)||(15738649-15738748)
chr2 (179-286)||(31854182-31854289)
[»] chr1 (10 HSPs)
chr1 (173-313)||(39063143-39063283)
chr1 (232-310)||(33216334-33216412)
chr1 (179-276)||(36791485-36791582)
chr1 (201-308)||(13282568-13282675)
chr1 (227-294)||(17373986-17374053)
chr1 (204-294)||(13287558-13287648)
chr1 (227-313)||(21762040-21762126)
chr1 (202-312)||(37770750-37770860)
chr1 (201-300)||(31869969-31870068)
chr1 (179-245)||(16082896-16082962)
[»] scaffold0146 (2 HSPs)
scaffold0146 (173-310)||(24432-24569)
scaffold0146 (225-286)||(32321-32382)
[»] chr8 (11 HSPs)
chr8 (173-311)||(6253301-6253439)
chr8 (12-65)||(8037014-8037067)
chr8 (12-65)||(33074576-33074629)
chr8 (198-311)||(44373990-44374103)
chr8 (201-249)||(775653-775701)
chr8 (201-249)||(781307-781355)
chr8 (230-310)||(6253584-6253664)
chr8 (201-285)||(34587657-34587741)
chr8 (175-274)||(18701604-18701703)
chr8 (198-314)||(16583186-16583302)
chr8 (173-241)||(21511112-21511180)
[»] chr5 (2 HSPs)
chr5 (198-286)||(42449950-42450038)
chr5 (225-308)||(36759191-36759274)


Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 213 - 538
Target Start/End: Original strand, 51329742 - 51330073
Alignment:
Q  213 gttgccggattgctcaacggtagttaactaccgctgagaacttttaggtaattttcttgtgtcattgtgaagttataaatgttaaaaaatcaattttctt 312  Q
    |||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  51329742 gttgtcggattgttcaacggtagttaactaccgctgagaacttttgggtaattttcttatgtcattgtgaagttataaatgttaaaaaatcaattttctt 51329841  T
Q  313 taaacttttcatgaacatggaaaacactttgaatgcaatatggacattagttcattcaattgtcatattataaggcaatggaaaatgatatatgaatacc 412  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51329842 taaacttttcatgaacatagaaaacactt-gaatgcaatatggacattagttcattcaattgtcatattataaggcaatggaaaatgatatatgaatacc 51329940  T
Q  413 aaacgagacaacttacactgaatttgtatacgttaggtccttcattttggctttttaat-aaatttttacttgctttgattcc------ttaccaacttc 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||      |||||||||||    
T  51329941 aaacgagacaacttacactgaatttgtatacgttaggtccttcattttggctttttaataaaatttttacttgctttgattccttaccattaccaacttc 51330040  T
Q  506 cacactatggcgtgtatcttggttgttgaatat 538  Q
    |||||||||||||||||||||||||||||||||    
T  51330041 cacactatggcgtgtatcttggttgttgaatat 51330073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 173 - 294
Target Start/End: Complemental strand, 27186209 - 27186088
Alignment:
Q  173 agcggtagttaactaccgttggcctcaacggcagttaattgttgccggattgctcaacggtagttaactaccgctgagaacttttaggtaattttcttgt 272  Q
    ||||| ||||||| ||||||| | ||| || || |||| ||||||||| ||||||||||||||||||||||||| | | |||||||| |||||| | | |    
T  27186209 agcggcagttaacaaccgttgacatcagcgacaattaactgttgccggcttgctcaacggtagttaactaccgccggggacttttagttaatttacatat 27186110  T
Q  273 gtcattgtgaagttataaatgt 294  Q
    |||||||||||||||| |||||    
T  27186109 gtcattgtgaagttatgaatgt 27186088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 51329557 - 51329610
Alignment:
Q  12 atgaaagtaaggaggaaagaatgtgagaaaatgtgagaatgtgagggtttttat 65  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  51329557 atgagagtaaggaggaaagaatgtgagaaaatgcgagaatgtgagggtttttat 51329610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 246
Target Start/End: Original strand, 9557414 - 9557481
Alignment:
Q  179 agttaactaccgttggcctcaacggcagttaattgttgccggattgctcaacggtagttaactaccgc 246  Q
    |||||||||||| ||||| || |||||||||| ||||||||| ||||  |||||||||||||||||||    
T  9557414 agttaactaccgctggccacagcggcagttaaatgttgccggtttgccaaacggtagttaactaccgc 9557481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 27189035 - 27189106
Alignment:
Q  217 ccggattgctcaacggtagttaactaccgctgagaacttttaggtaattttcttgtgtcattgtgaagttat 288  Q
    |||| |||||||||||||||||||||| |||  |  |||||||||||||||||||||| |||||||| ||||    
T  27189035 ccggcttgctcaacggtagttaactactgctaggggcttttaggtaattttcttgtgttattgtgaacttat 27189106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 310
Target Start/End: Complemental strand, 47867656 - 47867526
Alignment:
Q  179 agttaactaccgttggcctcaacggcagttaattgttgccggattgctcaacggtagttaactaccgctgagaacttttaggtaattttcttgtgtcatt 278  Q
    |||||||||||| |||| ||| || ||||||| || || ||| || ||||||||||||||| |||| ||| |  ||||||| |||||||| |||||||||    
T  47867656 agttaactaccgctggcttcagcgacagttaactgatgtcggcttcctcaacggtagttaattaccactgggg-cttttagttaattttcatgtgtcatt 47867558  T
Q  279 gtgaagttataaatgttaaaaaatcaattttc 310  Q
    |||| ||||| ||| ||| ||||  |||||||    
T  47867557 gtgatgttatgaatattagaaaagtaattttc 47867526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 16869016 - 16868966
Alignment:
Q  228 aacggtagttaactaccgctgagaacttttaggtaattttcttgtgtcatt 278  Q
    |||||||||||| |||||||||| |||||| ||||||||||||||||||||    
T  16869016 aacggtagttaattaccgctgaggacttttgggtaattttcttgtgtcatt 16868966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 312
Target Start/End: Original strand, 30288161 - 30288241
Alignment:
Q  232 gtagttaactaccgctgagaacttttaggtaattttcttgtgtcattgtgaagttataaatgttaaaaaatcaattttctt 312  Q
    |||||||||||||||||||  || ||  |||| || ||||||||||||||||||| | ||||| | |||||||||||||||    
T  30288161 gtagttaactaccgctgagggctatttagtaaattacttgtgtcattgtgaagttctcaatgtcagaaaatcaattttctt 30288241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 37267778 - 37267831
Alignment:
Q  12 atgaaagtaaggaggaaagaatgtgagaaaatgtgagaatgtgagggtttttat 65  Q
    |||| |||||||| || |||||||||| | ||||||||||||||||||||||||    
T  37267778 atgagagtaaggatgagagaatgtgaggagatgtgagaatgtgagggtttttat 37267831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 24398555 - 24398631
Alignment:
Q  234 agttaactaccgctgagaacttttaggtaattttcttgtgtcattgtgaagttataaatgttaaaaaatcaattttc 310  Q
    |||||||| ||||||||  | |||||||||||||| |||||||||||||| || |  |||||| |||| ||||||||    
T  24398555 agttaactgccgctgagggcctttaggtaattttcatgtgtcattgtgaacttttgtatgttagaaaagcaattttc 24398631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 192
Target Start/End: Original strand, 51329706 - 51329737
Alignment:
Q  161 cagaacgcatgtagcggtagttaactaccgtt 192  Q
    ||||||||||||||||||||||||||||||||    
T  51329706 cagaacgcatgtagcggtagttaactaccgtt 51329737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 11232720 - 11232768
Alignment:
Q  196 ctcaacggcagttaattgttgccggattgctcaacggtagttaactacc 244  Q
    |||||||| |||||| ||||| ||  |||||||||||||||||||||||    
T  11232720 ctcaacggtagttaactgttgtcgatttgctcaacggtagttaactacc 11232768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 161 - 288
Target Start/End: Complemental strand, 106910 - 106783
Alignment:
Q  161 cagaacgcatgtagcggtagttaactaccgttggcctcaacggcagttaattgttgccggattgctcaacggtagttaactaccgctgagaacttttagg 260  Q
    ||||||||| |||||||||||||||||||| |||   || |||||||||| ||||| ||| ||  ||||||||||||||||||||||  |  ||||| ||    
T  106910 cagaacgcacgtagcggtagttaactaccgctggtgccagcggcagttaactgttgtcggctttgtcaacggtagttaactaccgctaggggcttttggg 106811  T
Q  261 taattttcttgtgtcattgtgaagttat 288  Q
    ||||||| ||||||||||||||||||||    
T  106810 taatttttttgtgtcattgtgaagttat 106783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 201 - 316
Target Start/End: Complemental strand, 10311518 - 10311403
Alignment:
Q  201 cggcagttaattgttgccggattgctcaacggtagttaactaccgctgagaacttttaggtaattttcttgtgtcattgtgaagttataaatgttaaaaa 300  Q
    |||||||||| ||||| ||| |||||| | |||||||||||||||||| ||||||||||||||||| | ||||| |||||||||||||  |||| | ||     
T  10311518 cggcagttaactgttgtcggcttgctcgatggtagttaactaccgctgggaacttttaggtaatttccatgtgttattgtgaagttatgtatgtcagaac 10311419  T
Q  301 atcaattttctttaaa 316  Q
    ||||||||||| ||||    
T  10311418 atcaattttctgtaaa 10311403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 201 - 312
Target Start/End: Complemental strand, 49815817 - 49815706
Alignment:
Q  201 cggcagttaattgttgccggattgctcaacggtagttaactaccgctgagaacttttaggtaattttcttgtgtcattgtgaagttataaatgttaaaaa 300  Q
    |||||||||| || |||||| | || ||||||||||||||||||| ||||  |||||| |||||||||||| |||||||||||||| | ||||||| |||    
T  49815817 cggcagttaactgctgccggttagcccaacggtagttaactaccgttgagggcttttacgtaattttcttgcgtcattgtgaagttctcaatgttagaaa 49815718  T
Q  301 atcaattttctt 312  Q
    |  |||||||||    
T  49815717 agaaattttctt 49815706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 48093570 - 48093517
Alignment:
Q  12 atgaaagtaaggaggaaagaatgtgagaaaatgtgagaatgtgagggtttttat 65  Q
    |||| ||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  48093570 atgagagtaaggaggagagaatgtgaggaaatgtgagaatgtgagggtttttat 48093517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 225 - 313
Target Start/End: Original strand, 43036466 - 43036554
Alignment:
Q  225 ctcaacggtagttaactaccgctgagaacttttaggtaattttcttgtgtcattgtgaagttataaatgttaaaaaatcaattttcttt 313  Q
    |||||||||||||||||||||||  |  | |||| ||| ||| ||||||||||||||||||| |  |||| |||||| |||||||||||    
T  43036466 ctcaacggtagttaactaccgctaggggcatttaagtattttacttgtgtcattgtgaagttttttatgtcaaaaaagcaattttcttt 43036554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 311
Target Start/End: Complemental strand, 14968543 - 14968405
Alignment:
Q  173 agcggtagttaactaccgttggcctcaacggcagttaattgttgccggattgctcaacggtagttaactaccgctgagaacttttaggtaattttcttgt 272  Q
    ||||| |||||||||||| |||  ||| ||||| |||| ||| | |||||  ||||||| |||||||||||||||| ||  ||||  |||| || | |||    
T  14968543 agcggcagttaactaccgctggtgtcagcggcaattaactgtcgtcggatgtctcaacgatagttaactaccgctgggagttttttagtaaattacatgt 14968444  T
Q  273 gtcattgtgaagttataaatgttaaaaaatcaattttct 311  Q
    |||| ||||||||||| |||||   |||| |||||||||    
T  14968443 gtcaatgtgaagttatcaatgtctgaaaagcaattttct 14968405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 2333089 - 2333036
Alignment:
Q  12 atgaaagtaaggaggaaagaatgtgagaaaatgtgagaatgtgagggtttttat 65  Q
    |||| ||||||||||| ||||||| || ||||||||||||||||||||| ||||    
T  2333089 atgagagtaaggaggagagaatgtaaggaaatgtgagaatgtgagggttcttat 2333036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 231 - 312
Target Start/End: Complemental strand, 43035846 - 43035765
Alignment:
Q  231 ggtagttaactaccgctgagaacttttaggtaattttcttgtgtcattgtgaagttataaatgttaaaaaatcaattttctt 312  Q
    |||||||||||||||| | | || |||||||| ||| ||||||||| |||||| |||| ||||| | |||| ||||||||||    
T  43035846 ggtagttaactaccgccggggacatttaggtattttacttgtgtcaatgtgaacttatcaatgtcagaaaagcaattttctt 43035765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 21410174 - 21410128
Alignment:
Q  205 agttaattgttgccggattgctcaacggtagttaactaccgctgaga 251  Q
    |||||| || |||||||||||| ||||||||||||||||| ||||||    
T  21410174 agttaactgatgccggattgctgaacggtagttaactaccactgaga 21410128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 312
Target Start/End: Complemental strand, 19438409 - 19438324
Alignment:
Q  227 caacggtagttaactaccgctgagaacttttaggtaattttcttgtgtcattgtgaagttataaatgttaaaaaatcaattttctt 312  Q
    |||||||||||||||||||||| |  || ||  |||| || ||||||||||||||||||| | ||| | | |||| ||||||||||    
T  19438409 caacggtagttaactaccgctgggggctatttagtaaattacttgtgtcattgtgaagttctcaatatcataaaagcaattttctt 19438324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 17482750 - 17482702
Alignment:
Q  228 aacggtagttaactaccgctgagaacttttaggtaattttcttgtgtca 276  Q
    ||||||||||||||||||||| |  |||||| |||| ||||||||||||    
T  17482750 aacggtagttaactaccgctgggggcttttacgtaaatttcttgtgtca 17482702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 9e-22; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 161 - 310
Target Start/End: Complemental strand, 15336542 - 15336393
Alignment:
Q  161 cagaacgcatgtagcggtagttaactaccgttggcctcaacggcagttaattgttgccggattgctcaacggtagttaactaccgctgagaacttttagg 260  Q
    ||||||||| ||||||| |||||| ||||| ||||  || |||||||||| ||||||||| | || |||||||||||||||| ||||  |  ||||||      
T  15336542 cagaacgcacgtagcggcagttaattaccgctggctccagcggcagttaactgttgccggttagcccaacggtagttaactatcgcttggggcttttaca 15336443  T
Q  261 taattttcttgtgtcattgtgaagttataaatgttaaaaaatcaattttc 310  Q
    |||||||||||||| ||||||||||| | ||||| | |||| ||||||||    
T  15336442 taattttcttgtgttattgtgaagttctcaatgtcagaaaagcaattttc 15336393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 230 - 309
Target Start/End: Original strand, 35612003 - 35612082
Alignment:
Q  230 cggtagttaactaccgctgagaacttttaggtaattttcttgtgtcattgtgaagttataaatgttaaaaaatcaatttt 309  Q
    ||||||||||||||||||| || | ||| | |||||||||| | ||||||||||||||| ||||| | |||| |||||||    
T  35612003 cggtagttaactaccgctgggagcctttggataattttcttatttcattgtgaagttatcaatgtcagaaaagcaatttt 35612082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 288
Target Start/End: Original strand, 15901092 - 15901178
Alignment:
Q  202 ggcagttaattgttgccggattgctcaacggtagttaactaccgctgagaacttttaggtaattttcttgtgtcattgtgaagttat 288  Q
    ||||||||| || | |||| || |||||||||| |||| ||| |||| |  |||||  |||||||||||||||||||||||||||||    
T  15901092 ggcagttaactgctaccggctttctcaacggtaattaattactgctgggggcttttgagtaattttcttgtgtcattgtgaagttat 15901178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 42026151 - 42026098
Alignment:
Q  12 atgaaagtaaggaggaaagaatgtgagaaaatgtgagaatgtgagggtttttat 65  Q
    |||| ||||||||||| |||||||||| |||||||||||| ||| |||||||||    
T  42026151 atgagagtaaggaggagagaatgtgaggaaatgtgagaatatgaaggtttttat 42026098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 225 - 310
Target Start/End: Original strand, 47317779 - 47317864
Alignment:
Q  225 ctcaacggtagttaactaccgctgagaacttttaggtaattttcttgtgtcattgtgaagttataaatgttaaaaaatcaattttc 310  Q
    |||||||||||||||||||||||| |  | |||| ||| ||| ||||||||||||| ||||| | ||||| | |||| ||||||||    
T  47317779 ctcaacggtagttaactaccgctgggggcatttaagtattttacttgtgtcattgtaaagttttcaatgtcagaaaagcaattttc 47317864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 276
Target Start/End: Original strand, 13954067 - 13954142
Alignment:
Q  201 cggcagttaattgttgccggattgctcaacggtagttaactaccgctgagaacttttaggtaattttcttgtgtca 276  Q
    |||||||||| || || ||| ||||  ||||||| ||||||||||||| ||  ||||||||||||||| |||||||    
T  13954067 cggcagttaactgatgtcggtttgcagaacggtaattaactaccgctgggaggttttaggtaattttcatgtgtca 13954142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 16798654 - 16798717
Alignment:
Q  179 agttaactaccgttggcctcaacggcagttaattgttgccggattgctcaacggtagttaacta 242  Q
    ||||||||||||||| || || |||||||||| || |||||| |||| |||| |||||||||||    
T  16798654 agttaactaccgttgaccccagcggcagttaactgatgccggtttgcccaacagtagttaacta 16798717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 248
Target Start/End: Complemental strand, 3614520 - 3614443
Alignment:
Q  172 tagcggtagttaactaccgttg-gcctcaacggcagttaattgttgccggattgctcaacggtagttaactaccgctg 248  Q
    |||||||||||||||||||||| |   ||||||| ||||| ||  ||||| ||||  |||||||||||||||||||||    
T  3614520 tagcggtagttaactaccgttgagtgccaacggctgttaactgccgccggtttgcagaacggtagttaactaccgctg 3614443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 15336713 - 15336660
Alignment:
Q  12 atgaaagtaaggaggaaagaatgtgagaaaatgtgagaatgtgagggtttttat 65  Q
    |||| ||||||||||| |||||||||| |||  |||||||||||||||| ||||    
T  15336713 atgagagtaaggaggagagaatgtgaggaaaattgagaatgtgagggttcttat 15336660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 27870303 - 27870352
Alignment:
Q  260 gtaattttcttgtgtcattgtgaagttataaatgttaaaaaatcaatttt 309  Q
    ||||||| ||||||||| ||||||||||| ||||| |||||| |||||||    
T  27870303 gtaatttacttgtgtcaatgtgaagttatcaatgtcaaaaaagcaatttt 27870352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 32132887 - 32132804
Alignment:
Q  227 caacggtagttaactaccgctgagaacttttaggtaattttcttgtgtcattgtgaagttataaatgttaaaaaatcaattttc 310  Q
    |||||||||||||||||||||||   ||||| |||||||||||| ||||||||||||||||| ||||||| |||| ||||||||    
T  32132887 caacggtagttaactaccgctgatggcttttgggtaattttcttatgtcattgtgaagttatgaatgttagaaaaacaattttc 32132804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 226 - 310
Target Start/End: Original strand, 7822331 - 7822415
Alignment:
Q  226 tcaacggtagttaactaccgctgagaacttttaggtaattttcttgtgtcattgtgaagttataaatgttaaaaaatcaattttc 310  Q
    ||||||||||||||| ||| ||  | ||||||| ||||||||||||||| ||||||||||| | ||||| | |||||||||||||    
T  7822331 tcaacggtagttaacaaccacttgggacttttacgtaattttcttgtgttattgtgaagttctcaatgtcataaaatcaattttc 7822415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 433 - 479
Target Start/End: Complemental strand, 33527683 - 33527637
Alignment:
Q  433 aatttgtatacgttaggtccttcattttggctttttaataaattttt 479  Q
    ||||||||| || ||||||||||||||||||||||| |||| |||||    
T  33527683 aatttgtattcggtaggtccttcattttggctttttgataatttttt 33527637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 170 - 244
Target Start/End: Original strand, 26173115 - 26173189
Alignment:
Q  170 tgtagcggtagttaactaccgttggcctcaacggcagttaattgttgccggattgctcaacggtagttaactacc 244  Q
    ||||||||||||||||||| |||||||||| |||||||||| |||||||||||  | ||||||||||||||||||    
T  26173115 tgtagcggtagttaactactgttggcctcagcggcagttaactgttgccggatctcacaacggtagttaactacc 26173189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 44073264 - 44073211
Alignment:
Q  12 atgaaagtaaggaggaaagaatgtgagaaaatgtgagaatgtgagggtttttat 65  Q
    |||| ||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  44073264 atgagagtaaggaggagagaatgtgaggaaatgtgagaatgtgagggtttttat 44073211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 21831124 - 21831161
Alignment:
Q  173 agcggtagttaactaccgttggcctcaacggcagttaa 210  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21831124 agcggtagttaactaccgttggcctcaacggcagttaa 21831161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 244
Target Start/End: Original strand, 21833902 - 21833974
Alignment:
Q  172 tagcggtagttaactaccgttggcctcaacggcagttaattgttgccggattgctcaacggtagttaactacc 244  Q
    |||||||||||| | |||| |||||||| |||||||||| ||||||| |||  | ||||||||||||||||||    
T  21833902 tagcggtagttagccaccgctggcctcagcggcagttaactgttgccagatctcacaacggtagttaactacc 21833974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 247
Target Start/End: Complemental strand, 33403120 - 33403074
Alignment:
Q  201 cggcagttaattgttgccggattgctcaacggtagttaactaccgct 247  Q
    |||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  33403120 cggcagttaactgttgtcggcttgctcaacggtagttaactaccgct 33403074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 31173457 - 31173408
Alignment:
Q  234 agttaactaccgctgagaacttttaggtaattttcttgtgtcattgtgaa 283  Q
    |||||||||||| ||||  |||||||||||||||| ||||||||||||||    
T  31173457 agttaactaccgttgagggcttttaggtaattttcatgtgtcattgtgaa 31173408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 227 - 312
Target Start/End: Original strand, 33405769 - 33405854
Alignment:
Q  227 caacggtagttaactaccgctgagaacttttaggtaattttcttgtgtcattgtgaagttataaatgttaaaaaatcaattttctt 312  Q
    |||| |||||| ||||||| || |  |||||||||||||||| | ||||||||||||||||| ||||| | || | ||||||||||    
T  33405769 caactgtagttgactaccgttgggggcttttaggtaattttcatatgtcattgtgaagttatgaatgtcagaacaacaattttctt 33405854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 31184456 - 31184512
Alignment:
Q  227 caacggtagttaactaccgctgagaacttttaggtaattttcttgtgtcattgtgaa 283  Q
    |||||||||||||||||||||| | ||| | | ||||||| ||||||||||||||||    
T  31184456 caacggtagttaactaccgctggggactctaatgtaatttacttgtgtcattgtgaa 31184512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 274
Target Start/End: Original strand, 15738649 - 15738748
Alignment:
Q  175 cggtagttaactaccgttggcctcaacggcagttaattgttgccggattgctcaacggtagttaactaccgctgagaacttttaggtaattttcttgtgt 274  Q
    ||||||||||||||| |||    || |||||||||| || | | || || ||||||||||||||||||||||||||  |||||| | ||||||| |||||    
T  15738649 cggtagttaactaccattgaggccagcggcagttaactgctactggcttcctcaacggtagttaactaccgctgagggcttttaaggaattttcatgtgt 15738748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 286
Target Start/End: Original strand, 31854182 - 31854289
Alignment:
Q  179 agttaactaccgttggcctcaacggcagttaattgttgccggattgctcaacggtagttaactaccgctgagaacttttaggtaattttcttgtgtcatt 278  Q
    |||||||||||| || |  ||||||||||||| || |||||| |  |||||||||| ||||||| ||||| | |  |||  ||| ||| |||||||||||    
T  31854182 agttaactaccgctgacaccaacggcagttaactgatgccggttaactcaacggtaattaactatcgctggggatatttcagtattttacttgtgtcatt 31854281  T
Q  279 gtgaagtt 286  Q
    ||||||||    
T  31854282 gtgaagtt 31854289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 173 - 313
Target Start/End: Complemental strand, 39063283 - 39063143
Alignment:
Q  173 agcggtagttaactaccgttggcctcaacggcagttaattgttgccggattgctcaacggtagttaactaccgctgagaacttttaggtaattttcttgt 272  Q
    ||||| ||||||| |||||||||  || |||||||||| ||||| |||||||||||||||||||| ||||| | || |  |||||||||||||| | |||    
T  39063283 agcggcagttaacaaccgttggcaccagcggcagttaactgttgtcggattgctcaacggtagtttactactgatgggggcttttaggtaatttccatgt 39063184  T
Q  273 gtcattgtgaagttataaatgttaaaaaatcaattttcttt 313  Q
     | |||||||||||||  |||| | || | |||||||||||    
T  39063183 attattgtgaagttatgtatgtcagaacaacaattttcttt 39063143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 232 - 310
Target Start/End: Complemental strand, 33216412 - 33216334
Alignment:
Q  232 gtagttaactaccgctgagaacttttaggtaattttcttgtgtcattgtgaagttataaatgttaaaaaatcaattttc 310  Q
    |||||||||||||||||||| | |||| ||| ||| ||||||||||||||||||| | ||||| |||||| ||||||||    
T  33216412 gtagttaactaccgctgagagcatttaagtattttacttgtgtcattgtgaagttttcaatgtcaaaaaaacaattttc 33216334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 276
Target Start/End: Original strand, 36791485 - 36791582
Alignment:
Q  179 agttaactaccgttggcctcaacggcagttaattgttgccggattgctcaacggtagttaactaccgctgagaacttttaggtaattttcttgtgtca 276  Q
    ||||||||||| |||||  || |||||||||| || |||||| | || ||||||||||||||||| |||| | ||| | |||||||||||||||||||    
T  36791485 agttaactaccattggcaccagcggcagttaactgctgccggttagcccaacggtagttaactacggctggggactataaggtaattttcttgtgtca 36791582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 201 - 308
Target Start/End: Complemental strand, 13282675 - 13282568
Alignment:
Q  201 cggcagttaattgttgccggattgctcaacggtagttaactaccgctgagaacttttaggtaattttcttgtgtcattgtgaagttataaatgttaaaaa 300  Q
    |||||||||| || |||||| | |  ||||| | ||||||||||| ||| |||||||| ||||||||| |||||| ||||||| |||| ||||| | |||    
T  13282675 cggcagttaactgctgccggttagaccaacgattgttaactaccgttgaaaacttttatgtaattttcatgtgtcgttgtgaaattatgaatgtcagaaa 13282576  T
Q  301 atcaattt 308  Q
    | ||||||    
T  13282575 aacaattt 13282568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 227 - 294
Target Start/End: Original strand, 17373986 - 17374053
Alignment:
Q  227 caacggtagttaactaccgctgagaacttttaggtaattttcttgtgtcattgtgaagttataaatgt 294  Q
    |||||| ||||||||||||||||   |||||| ||||||||| | ||||||||||||||||| |||||    
T  17373986 caacggcagttaactaccgctgaaggcttttatgtaattttcatatgtcattgtgaagttatgaatgt 17374053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 294
Target Start/End: Original strand, 13287558 - 13287648
Alignment:
Q  204 cagttaattgttgccggattgctcaacggtagttaactaccgctgagaacttttaggtaattttcttgtgtcattgtgaagttataaatgt 294  Q
    ||||||| || |||||| |||  |||||||| ||||||||||||||    |||||||||||||| || |||||||||||| |||| |||||    
T  13287558 cagttaactgctgccggtttgtccaacggtaattaactaccgctgaaggattttaggtaatttttttatgtcattgtgaaattatgaatgt 13287648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 313
Target Start/End: Original strand, 21762040 - 21762126
Alignment:
Q  227 caacggtagttaactaccgctgagaacttttaggtaattttcttgtgtcattgtgaagttataaatgttaaaaaatcaattttcttt 313  Q
    |||||||||||||||||||||  | || |||||||| ||| ||| ||||| |||||| |||| ||||| | |||| |||||||||||    
T  21762040 caacggtagttaactaccgctagggacatttaggtattttacttatgtcaatgtgaacttatgaatgtcagaaaaacaattttcttt 21762126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 312
Target Start/End: Original strand, 37770750 - 37770860
Alignment:
Q  202 ggcagttaattgttgccggattgctcaacggtagttaactaccgctgagaacttttaggtaattttcttgtgtcattgtgaagttataaatgttaaaaaa 301  Q
    |||||||||||||||||||  |  ||||||||||||||||||  || ||  | ||||| || ||| ||||||||| |||||| |||| ||||| | ||||    
T  37770750 ggcagttaattgttgccggtattttcaacggtagttaactactactaagggcatttagatattttacttgtgtcaatgtgaacttatcaatgtcagaaaa 37770849  T
Q  302 tcaattttctt 312  Q
     ||||||||||    
T  37770850 gcaattttctt 37770860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 300
Target Start/End: Original strand, 31869969 - 31870068
Alignment:
Q  201 cggcagttaattgttgccggattgctcaacggtagttaactaccgctgagaacttttaggtaattttcttgtgtcattgtgaagttataaatgttaaaaa 300  Q
    ||||||||||||| |||||| |||   |||||||||||||||||||||     |||||||| |||| | |||||||||||||| || | ||||| |||||    
T  31869969 cggcagttaattgctgccggtttggcaaacggtagttaactaccgctgcaggtttttaggtcatttacatgtgtcattgtgaacttctcaatgtcaaaaa 31870068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 179 - 245
Target Start/End: Original strand, 16082896 - 16082962
Alignment:
Q  179 agttaactaccgttggcctcaacggcagttaattgttgccggattgctcaacggtagttaactaccg 245  Q
    |||||||||||| |||||||| |||||||||| |  || ||| ||||  ||||||||||||||||||    
T  16082896 agttaactaccgctggcctcagcggcagttaactactgtcggtttgcagaacggtagttaactaccg 16082962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 173 - 310
Target Start/End: Complemental strand, 24569 - 24432
Alignment:
Q  173 agcggtagttaactaccgttggcctcaacggcagttaattgttgccgg-attgctcaacggtagttaactaccgctgagaacttttaggtaattttcttg 271  Q
    ||||| |||||||||||| ||||  || |||||||||| ||||||||| ||| | |||||||||||||| |||| || |  || ||||||| ||| ||||    
T  24569 agcggcagttaactaccgctggcaccagcggcagttaactgttgccggtatttc-caacggtagttaaccaccgttgggggctattaggtattttacttg 24471  T
Q  272 tgtcattgtgaagttataaatgttaaaaaatcaattttc 310  Q
    ||||| |||||| |||| ||||| ||||||  |||||||    
T  24470 tgtcaatgtgaacttatcaatgtcaaaaaagaaattttc 24432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 32321 - 32382
Alignment:
Q  225 ctcaacggtagttaactaccgctgagaacttttaggtaattttcttgtgtcattgtgaagtt 286  Q
    |||||||||||||||||||||||| |  | |||| ||| ||| |||||||||||||||||||    
T  32321 ctcaacggtagttaactaccgctgggggcatttaagtattttacttgtgtcattgtgaagtt 32382  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 173 - 311
Target Start/End: Complemental strand, 6253439 - 6253301
Alignment:
Q  173 agcggtagttaactaccgttggcctcaacggcagttaattgttgccggattgctcaacggtagttaactaccgctgagaacttttaggtaattttcttgt 272  Q
    ||||||||||||||||||||||   || |||||||||| ||||||||  ||   || |||||||||||||||| || |  | ||||  || ||| |||||    
T  6253439 agcggtagttaactaccgttgggtccagcggcagttaactgttgccgatttttccagcggtagttaactaccgttgggggcatttaattattttacttgt 6253340  T
Q  273 gtcattgtgaagttataaatgttaaaaaatcaattttct 311  Q
    |||||||||||||| |  |||||| |||| |||||||||    
T  6253339 gtcattgtgaagttttctatgttagaaaagcaattttct 6253301  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 8037014 - 8037067
Alignment:
Q  12 atgaaagtaaggaggaaagaatgtgagaaaatgtgagaatgtgagggtttttat 65  Q
    |||| ||||||||||| |||||| ||| ||||||||||||||||||||||||||    
T  8037014 atgagagtaaggaggagagaatgcgaggaaatgtgagaatgtgagggtttttat 8037067  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 33074576 - 33074629
Alignment:
Q  12 atgaaagtaaggaggaaagaatgtgagaaaatgtgagaatgtgagggtttttat 65  Q
    |||| ||||||||||| |||||||||| |||||||||||||||||| |||||||    
T  33074576 atgagagtaaggaggagagaatgtgagtaaatgtgagaatgtgaggatttttat 33074629  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 311
Target Start/End: Complemental strand, 44374103 - 44373990
Alignment:
Q  198 caacggcagttaattgttgccggattgctcaacggtagttaactaccgctg-agaacttttaggtaattttcttgtgtcattgtgaagttataaatgtta 296  Q
    |||||| ||||||||||||||||||   |||| ||||||||||||||| || ||    ||||| | |||| ||||||||||||||||||||| ||||| |    
T  44374103 caacggtagttaattgttgccggatatatcaatggtagttaactaccgttggaggtaatttag-tcatttacttgtgtcattgtgaagttatgaatgtca 44374005  T
Q  297 aaaaatcaattttct 311  Q
     |||| |||||||||    
T  44374004 gaaaagcaattttct 44373990  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 775701 - 775653
Alignment:
Q  201 cggcagttaattgttgccggattgctcaacggtagttaactaccgctga 249  Q
    |||||||||| ||||||||| || |||||||||||||||||||| ||||    
T  775701 cggcagttaactgttgccggcttcctcaacggtagttaactacccctga 775653  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 781355 - 781307
Alignment:
Q  201 cggcagttaattgttgccggattgctcaacggtagttaactaccgctga 249  Q
    |||||||||| ||||||||| || |||||||||||||||||||| ||||    
T  781355 cggcagttaactgttgccggcttcctcaacggtagttaactacccctga 781307  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 310
Target Start/End: Original strand, 6253584 - 6253664
Alignment:
Q  230 cggtagttaactaccgctgagaacttttaggtaattttcttgtgtcattgtgaagttataaatgttaaaaaatcaattttc 310  Q
    ||||||||||||||||| | | || |||| ||| ||| ||||||||||||||||||| |  |||||| |||| ||||||||    
T  6253584 cggtagttaactaccgcgggggacatttaagtattttacttgtgtcattgtgaagttttctatgttagaaaagcaattttc 6253664  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 285
Target Start/End: Complemental strand, 34587741 - 34587657
Alignment:
Q  201 cggcagttaattgttgccggattgctcaacggtagttaactaccgctgagaacttttaggtaattttcttgtgtcattgtgaagt 285  Q
    ||||| |||| || |||||| ||||| |||||||||||||||||| ||    |||||| | ||||||| ||||||||||||||||    
T  34587741 cggcaattaactgctgccgggttgctgaacggtagttaactaccgttggaggcttttaagcaattttcatgtgtcattgtgaagt 34587657  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 274
Target Start/End: Original strand, 18701604 - 18701703
Alignment:
Q  175 cggtagttaactaccgttggcctcaacggcagttaattgttgccggattgctcaacggtagttaactaccgctgagaacttttaggtaattttcttgtgt 274  Q
    ||||||||||||||| |||    || |||||||||| || | | || || ||||||||||||||||||||||||||  |||||| | ||||||| |||||    
T  18701604 cggtagttaactaccattgaggccagcggcagttaactgctactggcttcctcaacggtagttaactaccgctgagggcttttaaggaattttcatgtgt 18701703  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 198 - 314
Target Start/End: Complemental strand, 16583302 - 16583186
Alignment:
Q  198 caacggcagttaattgttgccggattgctcaacggtagttaactaccgctgagaacttttaggtaattttcttgtgtcattgtgaagttataaatgttaa 297  Q
    ||||||||||||| ||| | ||| || | |||||||||||||||||||||| |  |||||  |||| || ||||||||| |  |||||  |  |||| ||    
T  16583302 caacggcagttaactgtcggcggttttcccaacggtagttaactaccgctgggggctttttagtaaattacttgtgtcaataggaagtattccatgtcaa 16583203  T
Q  298 aaaatcaattttcttta 314  Q
    |||| ||||||||||||    
T  16583202 aaaagcaattttcttta 16583186  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 241
Target Start/End: Original strand, 21511112 - 21511180
Alignment:
Q  173 agcggtagttaactaccgttggcctcaacggcagttaattgttgccggattgctcaacggtagttaact 241  Q
    ||||||||||||||||||||||  ||| |||||||||| || | || | |||| ||||||| |||||||    
T  21511112 agcggtagttaactaccgttgggttcagcggcagttaactgctcccagtttgcccaacggtggttaact 21511180  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 286
Target Start/End: Original strand, 42449950 - 42450038
Alignment:
Q  198 caacggcagttaattgttgccggattgctcaacggtagttaactaccgctgagaacttttaggtaattttcttgtgtcattgtgaagtt 286  Q
    ||||||||||||| ||  | ||| || ||||||||||||||||||||||| ||  | || | ||||||| ||||||||| |||||||||    
T  42449950 caacggcagttaactgccggcggttttctcaacggtagttaactaccgctaagggccttaacgtaatttgcttgtgtcaatgtgaagtt 42450038  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 308
Target Start/End: Original strand, 36759191 - 36759274
Alignment:
Q  225 ctcaacggtagttaactaccgctgagaacttttaggtaattttcttgtgtcattgtgaagttataaatgttaaaaaatcaattt 308  Q
    |||||||||||||||||||||||| |  | || ||||| ||| ||||||||| ||||||||| |  |||| |||||| ||||||    
T  36759191 ctcaacggtagttaactaccgctgggggcattcaggtattttacttgtgtcaatgtgaagttttttatgtcaaaaaagcaattt 36759274  T

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