View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20570_low_53 (Length: 260)

Name: NF20570_low_53
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20570_low_53
NF20570_low_53
[»] chr8 (2 HSPs)
chr8 (1-242)||(42991273-42991512)
chr8 (31-224)||(35017979-35018172)
[»] chr3 (2 HSPs)
chr3 (1-224)||(38213991-38214214)
chr3 (1-224)||(38218210-38218433)
[»] chr4 (6 HSPs)
chr4 (87-155)||(53495383-53495451)
chr4 (69-155)||(53488672-53488758)
chr4 (61-163)||(53492989-53493091)
chr4 (61-158)||(53499286-53499383)
chr4 (88-158)||(53502408-53502478)
chr4 (55-167)||(52591022-52591134)
[»] chr6 (2 HSPs)
chr6 (58-149)||(10411374-10411465)
chr6 (58-119)||(10379765-10379826)
[»] chr7 (4 HSPs)
chr7 (47-168)||(37188910-37189031)
chr7 (55-119)||(32715057-32715121)
chr7 (55-119)||(32709835-32709899)
chr7 (55-119)||(32718435-32718499)
[»] chr2 (2 HSPs)
chr2 (55-163)||(16942648-16942756)
chr2 (55-163)||(17013313-17013421)


Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 42991512 - 42991273
Alignment:
Q  1 gtggaagagacagaggataattcagtagctttgaaattgcggtagtaagctgtaaatggtgctttggaccaatcagttttcaccaaaccacctcttgtag 100  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42991512 gtggaagagacag--gataattcagtagctttgaaattgcggtagtaagctgtaaatggtgctttggaccaatcagttttcaccaaaccacctcttgtag 42991415  T
Q  101 cccaatcatcagcgttccagagacttgaatatattctcattggttggttctttgggaaaggaataccaatcgattcagcattcttgaagatccttattgg 200  Q
    ||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  42991414 cccaatcttcagcgttccaaagacttgaatatattctcatcggttggttctttgggaaaggaatactaatagattcagcattcttgaagatccttattgg 42991315  T
Q  201 gatgttgtcaaccaagaatctgcatttatatatcaacatgtt 242  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  42991314 gatgttgtcaaccaagaatctgcagttatatatcaacatgtt 42991273  T

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Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 31 - 224
Target Start/End: Complemental strand, 35018172 - 35017979
Alignment:
Q  31 ttgaaattgcggtagtaagctgtaaatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaat 130  Q
    |||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| || || ||||    
T  35018172 ttgaaattacggtagtatgctgtaaagggtgctttggaccaatcagttttcaccaatccacctcttgtggcccaatcatcagcattccacaggctggaat 35018073  T
Q  131 atattctcattggttggttctttgggaaaggaataccaatcgattcagcattcttgaagatccttattgggatgttgtcaaccaagaatctgca 224  Q
    | ||||||||||||||||||||||| ||||||| |||||| |||||| |||||||||| | ||||||||| ||||| |||||||||||||||||    
T  35018072 agattctcattggttggttctttggaaaaggaacaccaatagattcaacattcttgaatacccttattggcatgttatcaaccaagaatctgca 35017979  T

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Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 38213991 - 38214214
Alignment:
Q  1 gtggaagagacagaggataattcagtagctttgaaattgcggtagtaagctgtaaatggtgctttggaccaatcagttttcaccaaaccacctcttgtag 100  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38213991 gtggaagagacagaagataactcagtagctttgaaattgcggtagtaagctgtaaagggtgctttggaccaatcagttttcaccaaaccacctcttgtag 38214090  T
Q  101 cccaatcatcagcgttccagagacttgaatatattctcattggttggttctttgggaaaggaataccaatcgattcagcattcttgaagatccttattgg 200  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  38214091 cccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatggaataccaattgattcagcattcttgaagatccttattgg 38214190  T
Q  201 gatgttgtcaaccaagaatctgca 224  Q
    | ||||||||||||| ||||||||    
T  38214191 ggtgttgtcaaccaaaaatctgca 38214214  T

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Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 38218210 - 38218433
Alignment:
Q  1 gtggaagagacagaggataattcagtagctttgaaattgcggtagtaagctgtaaatggtgctttggaccaatcagttttcaccaaaccacctcttgtag 100  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38218210 gtggaagagacagaagataactcagtagctttgaaattgcggtagtaagctgtaaagggtgctttggaccaatcagttttcaccaaaccacctcttgtag 38218309  T
Q  101 cccaatcatcagcgttccagagacttgaatatattctcattggttggttctttgggaaaggaataccaatcgattcagcattcttgaagatccttattgg 200  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  38218310 cccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatggaataccaattgattcagcattcttgaagatccttattgg 38218409  T
Q  201 gatgttgtcaaccaagaatctgca 224  Q
    | ||||||||||||| ||||||||    
T  38218410 ggtgttgtcaaccaaaaatctgca 38218433  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 87 - 155
Target Start/End: Complemental strand, 53495451 - 53495383
Alignment:
Q  87 accacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttgg 155  Q
    |||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||    
T  53495451 accacctcttgttgcccaatcatcagcattccatagacttgaatatatcctcattggttgattctttgg 53495383  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 53488672 - 53488758
Alignment:
Q  69 ccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttgg 155  Q
    |||||| |||||||| | |||||||||||| ||||||||||| || ||||| ||||||||||||| ||||||||| || ||||||||    
T  53488672 ccaatctgttttcacaagaccacctcttgttgcccaatcatcggcattccatagacttgaatataatctcattggctgcttctttgg 53488758  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 61 - 163
Target Start/End: Complemental strand, 53493091 - 53492989
Alignment:
Q  61 gctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttgggaaag 160  Q
    |||||||||||||| || || || |  || |||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||| || ||||| |    
T  53493091 gctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattccagagacttgagtatatcctcattggttggtttttggggaatg 53492992  T
Q  161 gaa 163  Q
    |||    
T  53492991 gaa 53492989  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 158
Target Start/End: Complemental strand, 53499383 - 53499286
Alignment:
Q  61 gctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttgggaa 158  Q
    |||||||||||||| || || || |  || |||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||| || |||||    
T  53499383 gctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattccagagacttgagtatatcctcattggttggtttttggggaa 53499286  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 158
Target Start/End: Complemental strand, 53502478 - 53502408
Alignment:
Q  88 ccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttgggaa 158  Q
    ||||||||||| ||||| | ||| || ||||| | ||||||||||||||||||||||||||||||||||||    
T  53502478 ccacctcttgttgcccagttatctgcattccacaaacttgaatatattctcattggttggttctttgggaa 53502408  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 167
Target Start/End: Complemental strand, 52591134 - 52591022
Alignment:
Q  55 aatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttg 154  Q
    ||||| |||| |||||||||||||||| | | ||| || ||||| ||||||| ||| || | ||| |||||||||||||| ||||||| |||| | || |    
T  52591134 aatggggcttgggaccaatcagttttcgctagacctccccttgtggcccaattatctgcatcccaaagacttgaatatatactcattgcttggcttttag 52591035  T
Q  155 ggaaaggaatacc 167  Q
    | |||||||||||    
T  52591034 gaaaaggaatacc 52591022  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 149
Target Start/End: Complemental strand, 10411465 - 10411374
Alignment:
Q  58 ggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggtt 149  Q
    ||||||||||||||||| |||||| |||||||||| |||||||||||||||||||| ||||| |  ||   ||||||| |||||||||||||    
T  10411465 ggtgctttggaccaatctgttttctccaaaccaccccttgtagcccaatcatcagcattccataagctattatatattttcattggttggtt 10411374  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 10379765 - 10379826
Alignment:
Q  58 ggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttcca 119  Q
    ||||||||||||||||| |||||| | |||||||| ||||| |||||||||||||| |||||    
T  10379765 ggtgctttggaccaatctgttttctctaaaccaccccttgtggcccaatcatcagcattcca 10379826  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 168
Target Start/End: Complemental strand, 37189031 - 37188910
Alignment:
Q  47 aagctgtaaatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttg 146  Q
    |||| ||||| || || ||||||||||| || || || |  |||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||||||    
T  37189031 aagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtagcccaatcatcagcattccaaagactagaatagattctcattggttg 37188932  T
Q  147 gttctttgggaaaggaatacca 168  Q
    | | || ||||| |||| ||||    
T  37188931 gcttttggggaatggaacacca 37188910  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 32715121 - 32715057
Alignment:
Q  55 aatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttcca 119  Q
    ||||||||||| |||||||| |||||| |||||||||||||||| ||||||||||| || |||||    
T  32715121 aatggtgcttttgaccaatctgttttctccaaaccacctcttgtggcccaatcatctgcattcca 32715057  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 32709899 - 32709835
Alignment:
Q  55 aatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttcca 119  Q
    |||||||||||||||||||| |||||| | || ||||||||||| ||||||||||| || |||||    
T  32709899 aatggtgctttggaccaatctgttttctctaatccacctcttgttgcccaatcatctgcattcca 32709835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 32718499 - 32718435
Alignment:
Q  55 aatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttcca 119  Q
    ||||||||||| ||||||||||||||  | || ||||| ||||| ||||||||||| || |||||    
T  32718499 aatggtgcttttgaccaatcagttttttctaatccaccccttgtggcccaatcatctgcattcca 32718435  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 163
Target Start/End: Complemental strand, 16942756 - 16942648
Alignment:
Q  55 aatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttg 154  Q
    ||||| || |||| |||||| |||||||| |  |||||||| || ||||||| ||| || ||||| |||||||||||||| ||||| | |||||||||||    
T  16942756 aatggagcattggtccaatctgttttcacaatcccacctctagtggcccaattatctgcattccaaagacttgaatatatcctcatggcttggttctttg 16942657  T
Q  155 ggaaaggaa 163  Q
    | |||||||    
T  16942656 gaaaaggaa 16942648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 163
Target Start/End: Complemental strand, 17013421 - 17013313
Alignment:
Q  55 aatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttg 154  Q
    ||||| || |||| |||||| |||||||| |  |||||||| || ||||||| ||| || ||||| |||||||||||||| ||||| | |||||||||||    
T  17013421 aatggagcattggtccaatctgttttcacaatcccacctctagtggcccaattatctgcattccaaagacttgaatatatcctcatggcttggttctttg 17013322  T
Q  155 ggaaaggaa 163  Q
    | |||||||    
T  17013321 gaaaaggaa 17013313  T

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