View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_low_55 (Length: 258)
Name: NF20570_low_55
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 23 - 225
Target Start/End: Complemental strand, 44728577 - 44728374
Alignment:
| Q |
23 |
aagaaaccttacaagtattcttctcctcctccaccatatgtccaccctaaaccttactaccattctccaccacccccaaagaaaccatataaatattctt |
122 |
Q |
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| T |
44728577 |
aagaaaccttacaagtattcttctcctcctccaccatatgtccaccctaaaccttactaccattctccaccacccccaaagaaaccatacaaatattctt |
44728478 |
T |
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| Q |
123 |
ctcctccaccaccagtgcatg-taagccctaaaccttactaccattccccaccaccaccaaagaagccatacaaatattcctctcctcctccaccagtgc |
221 |
Q |
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| T |
44728477 |
ctcctccaccaccagtgcatgttaagccctaaaccttactaccattccccaccaccaccaaagaagccatacaaatattcctctcctcctccaccagtgc |
44728378 |
T |
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| Q |
222 |
atca |
225 |
Q |
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|||| |
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| T |
44728377 |
atca |
44728374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 44728499 - 44728296
Alignment:
| Q |
23 |
aagaaaccttacaagtattcttctcctcctccaccat---atgtcca-ccctaaaccttactaccattctccaccacccccaaagaaaccatataaatat |
118 |
Q |
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| T |
44728499 |
aagaaaccatacaaatattcttctcctccaccaccagtgcatgttaagccctaaaccttactaccattccccaccaccaccaaagaagccatacaaatat |
44728400 |
T |
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| Q |
119 |
tcttctcctccaccaccagtgcat---gtaagccctaaaccttactaccattccccaccaccaccaaagaagccatacaaatattcctctcctcctccac |
215 |
Q |
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| T |
44728399 |
tcctctcctcctccaccagtgcatcacgtcagccctaagccctactaccactctccaccaccaccaaagaagccatacaaatactcatcccctccaccac |
44728300 |
T |
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| Q |
216 |
cagt |
219 |
Q |
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|||| |
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| T |
44728299 |
cagt |
44728296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 44728589 - 44728542
Alignment:
| Q |
170 |
ccaccaccaccaaagaagccatacaaatattcctctcctcctccacca |
217 |
Q |
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||||||||||||||||| || ||||| ||||| ||||||||||||||| |
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| T |
44728589 |
ccaccaccaccaaagaaaccttacaagtattcttctcctcctccacca |
44728542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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