View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_low_6 (Length: 515)
Name: NF20570_low_6
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 282 - 505
Target Start/End: Complemental strand, 32747063 - 32746840
Alignment:
| Q |
282 |
aagcattaagtagcactgaaaacaaaaaatattggcagatctctgtgaaatgaagaatttacaggaacttgacctcagcagaaatagaatgagtggtgat |
381 |
Q |
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| T |
32747063 |
aagcattaagtagcactgaaaacaaaaaatattggcaggtctctgtgaaatgaagaatttacaggaacttgacctcagcagaaatagaatgagtggtgat |
32746964 |
T |
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| Q |
382 |
tttccacattgccttagcaacttgacaaacctccgagtacttgatttatcctccaataattttgttggaaatattccatctttcatcactagtctcaagt |
481 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32746963 |
tttccacattgccttagcaacttgacaaacctccaagtacttgatttatcctccaataattttgttggaaatattccatctttcatcactagtctcaagt |
32746864 |
T |
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| Q |
482 |
ctcttgaatatctatctccctttg |
505 |
Q |
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|||||||||||||||||| ||||| |
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| T |
32746863 |
ctcttgaatatctatctctctttg |
32746840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 32747216 - 32747152
Alignment:
| Q |
24 |
accagctcctctggagtagcaaaaacccaccctagaaaatttcaagaactagattagtgattcac |
88 |
Q |
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| T |
32747216 |
accagctcctctggagtagcaaaaacccaccctagaaaatttcaagaactagattagtgattcac |
32747152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 6e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 295 - 505
Target Start/End: Complemental strand, 4914040 - 4913829
Alignment:
| Q |
295 |
cactgaaaacaaaa-aatattggcagatctctgtgaaatgaagaatttacaggaacttgacctcagcagaaatagaatgagtggtgattttccacattgc |
393 |
Q |
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|||||||||||||| ||||||| ||| | |||| |||||||||| | |||||||||||||||||||||||| ||||||||||| ||||||| || ||| |
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| T |
4914040 |
cactgaaaacaaaataatattgacaggattatgtggaatgaagaatctgcaggaacttgacctcagcagaaatggaatgagtggttattttcctcaatgc |
4913941 |
T |
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| Q |
394 |
cttagcaacttgacaaacctccgagtacttgatttatcctccaataattttgttggaaatattccatctttcatcactagtctcaagtctcttgaatatc |
493 |
Q |
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||||| |||||||||| |||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
4913940 |
cttagaaacttgacaagcctcagagtacttgatttatcctcaaataattttgttggaaacattccatctttcatcattagtctcaagtctcttgaatatc |
4913841 |
T |
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| Q |
494 |
tatctccctttg |
505 |
Q |
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|||||| ||||| |
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| T |
4913840 |
tatctctctttg |
4913829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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