View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_low_60 (Length: 252)
Name: NF20570_low_60
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_low_60 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 19557217 - 19557456
Alignment:
| Q |
1 |
acaacataacatgtaagttccataaacaaaaaaccatttccaaacaatgaaaatctgttaatatcgtaatttgtagataacaaattgctccatccatatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19557217 |
acaacataacatgtaagttccataaacaaaaaaccatttccaaacaatgaaaatctgttaatatcgtaatttgtagataacaaattgctccatccatatg |
19557316 |
T |
|
| Q |
101 |
cagatctctccatgcaaactgcaagcattattgtatgttctttcnnnnnnntattggatgtgagcactgagtatacaaaatatatatgaataccctgaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19557317 |
cagatctctccatgcaaactgcaagcattattgtatgttctttcaaaaaaatattggatgtgagcactgagtatacaaaatatatatgaataccctgaaa |
19557416 |
T |
|
| Q |
201 |
aaatgcaaattctctttaagagcttaaatactgatatatt |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
19557417 |
aaatgcaaattctctttaagagcttaaatactgatatatt |
19557456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 61 - 240
Target Start/End: Original strand, 7867324 - 7867503
Alignment:
| Q |
61 |
atatcgtaatttgtagataacaaattgctccatccatatgcagatctctccatgcaaactgcaagcattattgtatgttctttcnnnnnnntattggatg |
160 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7867324 |
atatcgtaatttgtagataacaaattgctccatccatatgcagatctctccatgcaaactgcaagcattattgtatgttctttcaaaaaaatattggatg |
7867423 |
T |
|
| Q |
161 |
tgagcactgagtatacaaaatatatatgaataccctgaaaaaatgcaaattctctttaagagcttaaatactgatatatt |
240 |
Q |
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| T |
7867424 |
tgagcactgagtatacaaaatatatatgaataccctgaaaaaatgcaaattctctttaagagcttaaatactgatatatt |
7867503 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 7867091 - 7867144
Alignment:
| Q |
5 |
cataacatgtaagttccataaacaaaaaaccatttccaaacaatgaaaatctgt |
58 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7867091 |
cataacatgtaagttccataaacaaaaatccatttccaaacaatgaaaatctgt |
7867144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 61 - 240
Target Start/End: Complemental strand, 45070606 - 45070428
Alignment:
| Q |
61 |
atatcgtaatttgtagataacaaattgctccatccatatgcagatctctccatgcaaactgcaagcattattgtatgttctttcnnnnnnntattggatg |
160 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45070606 |
atatcgtaatttgtagataacaaattgctccatccatatgcagatctctccatgcaaactgcaagcattattgtatgttctttcaaaaaaatattggatg |
45070507 |
T |
|
| Q |
161 |
tgagcactgagtatacaaaatatatatgaataccctgaaaaaatgcaaattctctttaagagcttaaatactgatatatt |
240 |
Q |
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||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45070506 |
tgagcaccgagtatacaaaatatatatgaata-cctgaaaaaatgcaaattctctttaagagcttaaatactgatatatt |
45070428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 45070840 - 45070787
Alignment:
| Q |
5 |
cataacatgtaagttccataaacaaaaaaccatttccaaacaatgaaaatctgt |
58 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45070840 |
cataacatgtaagttccataaacaaaaaaccatttccaaacaatgaaaatctgt |
45070787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 153 - 240
Target Start/End: Complemental strand, 19897295 - 19897208
Alignment:
| Q |
153 |
attggatgtgagcactgagtatacaaaatatatatgaataccctgaaaaaatgcaaattctctttaagagcttaaatactgatatatt |
240 |
Q |
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|||| |||||||||||||| ||| |||||||||||||||||| |||||||||| |||| |||||||||| |||||||| ||||||||| |
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| T |
19897295 |
attgtatgtgagcactgagcatagaaaatatatatgaataccttgaaaaaatgaaaatgctctttaagatcttaaatattgatatatt |
19897208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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