View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_low_68 (Length: 245)
Name: NF20570_low_68
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_low_68 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 226
Target Start/End: Original strand, 6146793 - 6147002
Alignment:
| Q |
17 |
aatatcagcaacaccccaattcacatgatcttgtacataaacaattaatgtcacaccaagaatgagtccactacaaagtccacaattccaccaattgaaa |
116 |
Q |
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| T |
6146793 |
aatatcagcaacaccccaattcacatgatcttgtacataaacaattaatgtcacaccaagaatgagtccactacaaagtccacaattccaccaattgaaa |
6146892 |
T |
|
| Q |
117 |
aatgacattttttgccttctttcttcaatatgattatcatcaaattgatcagctccaaaactctctaaagaaggtttgtgtcctcctgttcctattgata |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6146893 |
aatgacattttttgccttctttcttcaatatgattatcatcaaattgatcagctccaaaactctctaaagaaggtttgtgtcctcctgttcctattgata |
6146992 |
T |
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| Q |
217 |
ttaaatatat |
226 |
Q |
| |
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|||||||||| |
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| T |
6146993 |
ttaaatatat |
6147002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 23693910 - 23694113
Alignment:
| Q |
17 |
aatatcagcaacaccccaattcacatgatcttgtacataaacaattaatgtcacaccaagaatgagtccactacaaagtccacaattccaccaattgaaa |
116 |
Q |
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|||||||||| |||||||||| | | |||||||| ||||||||| | ||||| || ||||| ||||||||||| || |||||||||||||||||||| |
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| T |
23693910 |
aatatcagcagcaccccaatttatgttatcttgtatataaacaataagggtcactcctagaataagtccactacatagagcacaattccaccaattgaaa |
23694009 |
T |
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| Q |
117 |
aatgacattttttgccttctttcttcaatatgattatcatcaaattgatcagctccaaaactctctaaagaaggtttgtgtcctcctgttcctattgata |
216 |
Q |
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|| ||||||||||| | |||||||||| ||||| ||||||||||| ||||||||||| || || || ||||||||||| ||||| ||| ||||||||| |
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| T |
23694010 |
aaggacattttttgtttcctttcttcaacatgatcctcatcaaattggtcagctccaaagctttccaaggaaggtttgtggcctccagttgctattgata |
23694109 |
T |
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| Q |
217 |
ttaa |
220 |
Q |
| |
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|||| |
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| T |
23694110 |
ttaa |
23694113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 202
Target Start/End: Original strand, 31065323 - 31065423
Alignment:
| Q |
102 |
ttccaccaattgaaaaatgacattttttgccttctttcttcaatatgattatcatcaaattgatcagctccaaaactctctaaagaaggtttgtgtcctc |
201 |
Q |
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|||||||| ||||| || |||||||| | | | |||||||| | |||| ||||||||||||||||||||||| || || || | ||||||||||||| |
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| T |
31065323 |
ttccaccagttgaagaaagacattttcttcttcctttcttcgacgtgatcttcatcaaattgatcagctccaaagctttccaagcatggtttgtgtcctc |
31065422 |
T |
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| Q |
202 |
c |
202 |
Q |
| |
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| |
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| T |
31065423 |
c |
31065423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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