View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_low_69 (Length: 244)
Name: NF20570_low_69
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_low_69 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 244
Target Start/End: Original strand, 37592054 - 37592277
Alignment:
| Q |
10 |
catcatcattttcgaaggcatgctgggagtttggtagtgaacgacattatacgaggggtggcaccgcttagtgccgaatcgctagtttggtttataattc |
109 |
Q |
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| T |
37592054 |
catcatcattttcgaaggcatgctgggagtttggtagtgaacgacattatacgaggggtggcaccgcttagtgccgaatcgctagtttggtttataattc |
37592153 |
T |
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| Q |
110 |
aagagaagttgaacacaaggaatagattcaagagattaaatactataattgaaccatcagtgatgaatatttgcacatcacagcttaaagcaacaatacg |
209 |
Q |
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| T |
37592154 |
aagagaagttgaccacaaggaatagattcaagagattaaatattatacttgaacc-----------atatttgcacatcacagcttaaagcaacaatacg |
37592242 |
T |
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| Q |
210 |
ttttactcatattttcatatgaatgtgtatgtatt |
244 |
Q |
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| T |
37592243 |
ttttactcatattttcatatgaatgtgtatgtatt |
37592277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 93 - 244
Target Start/End: Original strand, 37530919 - 37531070
Alignment:
| Q |
93 |
agtttggtttataattcaagagaagttgaacacaaggaatagattcaagagattaaatactataattgaaccatcagtgatgaatatttgcacatcacag |
192 |
Q |
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| T |
37530919 |
agtttggtttataattcaagagaagttgaacacaaggaatagattgaagagattaaatactataatttaaccatcagtgatgaatatttgcacatcacag |
37531018 |
T |
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| Q |
193 |
cttaaagcaacaatacgttttactcatattttcatatgaatgtgtatgtatt |
244 |
Q |
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| T |
37531019 |
cttaaagcaacaatacgttttactcataatttcatatgaatgtgtatgtatt |
37531070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 64 - 244
Target Start/End: Original strand, 37694467 - 37694636
Alignment:
| Q |
64 |
ggggtggcaccgcttagtgccgaatcgctagtttggtttataattcaagagaagttgaacacaaggaatagattcaagagattaaatactataattgaac |
163 |
Q |
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| T |
37694467 |
ggggtggcaccgcttagtgccgaatcgctagtttggtttataattcaagagaggttgaacacaaggaatagattcaagagattaaatattataattgaac |
37694566 |
T |
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| Q |
164 |
catcagtgatgaatatttgcacatcacagcttaaagcaacaatacgttttactcatattttcatatgaatgtgtatgtatt |
244 |
Q |
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| T |
37694567 |
c-----------atatttgcacatcacagcttaaagcaacaatacgttttactcatattttcatatgaatgtgtatgtatt |
37694636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 102 - 244
Target Start/End: Original strand, 37709434 - 37709565
Alignment:
| Q |
102 |
tataattcaagagaagttgaacacaaggaatagattcaagagattaaatactataattgaaccatcagtgatgaatatttgcacatcacagcttaaagca |
201 |
Q |
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| T |
37709434 |
tataattcaagagaagttgaacacaaggaatagattcaagagattaaatattataattgaaccat-----------atttgcacatcacagcttaaagca |
37709522 |
T |
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| Q |
202 |
acaatacgttttactcatattttcatatgaatgtgtatgtatt |
244 |
Q |
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| T |
37709523 |
acaatacgttttactcatattttcatatgaatgtgtatgtatt |
37709565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 10 - 119
Target Start/End: Original strand, 37709292 - 37709413
Alignment:
| Q |
10 |
catcatcattttcgaaggcatgctgggagtttggtagtgaacgacattatacgaggg------------gtggcaccgcttagtgccgaatcgctagttt |
97 |
Q |
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| T |
37709292 |
catcatcattttcaaaggcatgctgggagtttggtagtgaacgacattatacgaggggtccggggaggagtggcaccgcttagtgccgaatcgctagttt |
37709391 |
T |
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| Q |
98 |
ggtttataattcaagagaagtt |
119 |
Q |
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| T |
37709392 |
ggtttataattcaagagaagtt |
37709413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 37821610 - 37821678
Alignment:
| Q |
176 |
atatttgcacatcacagcttaaagcaacaatacgttttactcatattttcatatgaatgtgtatgtatt |
244 |
Q |
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| T |
37821610 |
atatttgcacatcacagcttaaagcaacaatacattttactcatattttcatatgaatgtgtatgtatt |
37821678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 44
Target Start/End: Original strand, 37530892 - 37530926
Alignment:
| Q |
10 |
catcatcattttcgaaggcatgctgggagtttggt |
44 |
Q |
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| T |
37530892 |
catcatcattttcgaaggcatgctgggagtttggt |
37530926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 45783034 - 45782980
Alignment:
| Q |
185 |
catcacagcttaaagcaacaatacgttttactcatattttcatatgaatgtgtat |
239 |
Q |
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| T |
45783034 |
catcacagcttaaagcaacaatatgttttacccatattttcaaatgaatgtgtat |
45782980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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