View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20570_low_7 (Length: 496)

Name: NF20570_low_7
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20570_low_7
NF20570_low_7
[»] scaffold0008 (10 HSPs)
scaffold0008 (50-161)||(7508-7619)
scaffold0008 (377-474)||(7191-7288)
scaffold0008 (377-474)||(17752-17849)
scaffold0008 (62-161)||(18072-18166)
scaffold0008 (229-296)||(5651-5718)
scaffold0008 (229-296)||(17930-17997)
scaffold0008 (229-296)||(16426-16493)
scaffold0008 (229-280)||(7382-7433)
scaffold0008 (405-467)||(16256-16318)
scaffold0008 (377-463)||(5485-5571)
[»] chr4 (2 HSPs)
chr4 (377-474)||(25364526-25364622)
chr4 (240-296)||(25364389-25364445)


Alignment Details
Target: scaffold0008 (Bit Score: 108; Significance: 5e-54; HSPs: 10)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 50 - 161
Target Start/End: Complemental strand, 7619 - 7508
Alignment:
Q  50 aggaaatgaattggaaatgatgataagtgcgttgtattgatatgatataaacgataattaagttgatagaaatccatcctagaaatctatcttgattgat 149  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7619 aggaaatgaattggaaatgatgataagtgtgttgtattgatatgatataaacgataattaagttgatagaaatccatcctagaaatctatcttgattgat 7520  T
Q  150 atgtttattctt 161  Q
    ||||||||||||    
T  7519 atgtttattctt 7508  T

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Target: scaffold0008; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 377 - 474
Target Start/End: Complemental strand, 7288 - 7191
Alignment:
Q  377 gattaattctctaagctataaaatatccagacccttcctcaaagcttaaatgttgatgcgtcaagtttggggaaacctacaaatacaatttctctgtc 474  Q
    |||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  7288 gattaattctttaagctatacaatatccatacccttcctcaaagcttaaatgttgatgcgtcaagtttgaggaaacctacaaatacaatttctttgtc 7191  T

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Target: scaffold0008; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 377 - 474
Target Start/End: Complemental strand, 17849 - 17752
Alignment:
Q  377 gattaattctctaagctataaaatatccagacccttcctcaaagcttaaatgttgatgcgtcaagtttggggaaacctacaaatacaatttctctgtc 474  Q
    |||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  17849 gattaattctctaagctatacaatatccaaacccttcctccaagcttaaatgttgatgcgtcaagtttgaggaaacctacaaatacaatttctttgtc 17752  T

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Target: scaffold0008; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 62 - 161
Target Start/End: Complemental strand, 18166 - 18072
Alignment:
Q  62 ggaaatgatgataagtgcgttgtattgatatgatataaacgataattaagttgatagaaatccatcctagaaatctatcttgattgatatgtttattctt 161  Q
    |||||||||||||||||||||||||      ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18166 ggaaatgatgataagtgcgttgtat-----cgatataaactataattaagttgatagaaatccatcctagatatctatcttgattgatatgtttattctt 18072  T

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Target: scaffold0008; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 229 - 296
Target Start/End: Complemental strand, 5718 - 5651
Alignment:
Q  229 ctacactctccatgattggatgggggagatatttctttttataaattcttctcttaaagaagcatcac 296  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  5718 ctacactctccatgattggatgggggagataattctttttataatttcttctcttaaagaagcatcac 5651  T

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Target: scaffold0008; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 229 - 296
Target Start/End: Complemental strand, 17997 - 17930
Alignment:
Q  229 ctacactctccatgattggatgggggagatatttctttttataaattcttctcttaaagaagcatcac 296  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17997 ctacactctctatgattggatgggggagatatttctttttataaattcttctgttaaagaagcatcac 17930  T

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Target: scaffold0008; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 229 - 296
Target Start/End: Complemental strand, 16493 - 16426
Alignment:
Q  229 ctacactctccatgattggatgggggagatatttctttttataaattcttctcttaaagaagcatcac 296  Q
    ||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||    
T  16493 ctacactctccatgattggatggggaagataattctttttataatttcttctcttaaagaagcatcac 16426  T

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Target: scaffold0008; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 229 - 280
Target Start/End: Complemental strand, 7433 - 7382
Alignment:
Q  229 ctacactctccatgattggatgggggagatatttctttttataaattcttct 280  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7433 ctacactctctatgattggatgggggagatatttctttttataaattcttct 7382  T

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Target: scaffold0008; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 405 - 467
Target Start/End: Complemental strand, 16318 - 16256
Alignment:
Q  405 agacccttcctcaaagcttaaatgttgatgcgtcaagtttggggaaacctacaaatacaattt 467  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||| |||| ||||||||    
T  16318 agacccttcctcaaagcttaaatgttgatgcgtcaagtttgaggatacccacaagtacaattt 16256  T

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Target: scaffold0008; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 377 - 463
Target Start/End: Complemental strand, 5571 - 5485
Alignment:
Q  377 gattaattctctaagctataaaatatccagacccttcctcaaagcttaaatgttgatgcgtcaagtttggggaaacctacaaataca 463  Q
    ||||||||||||||| | || | | | ||||||||||||||||||||||||||||||| |||||||||| ||| ||| |||| ||||    
T  5571 gattaattctctaaggtttacatttttcagacccttcctcaaagcttaaatgttgatgtgtcaagtttgaggatacccacaagtaca 5485  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 377 - 474
Target Start/End: Original strand, 25364526 - 25364622
Alignment:
Q  377 gattaattctctaagctataaaatatccagacccttcctcaaagcttaaatgttgatgcgtcaagtttggggaaacctacaaatacaatttctctgtc 474  Q
    ||||||||||||||| | || ||| | |||||||||||| |||||||||||||||||||||||||||| | || ||| ||||||||||||||| ||||    
T  25364526 gattaattctctaagttttacaattttcagacccttccttaaagcttaaatgttgatgcgtcaagttt-gagatacccacaaatacaatttctttgtc 25364622  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 25364389 - 25364445
Alignment:
Q  240 atgattggatgggggagatatttctttttataaattcttctcttaaagaagcatcac 296  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||    
T  25364389 atgattggatgggggagatatttctttttataaattcttctctaagagaagaatcac 25364445  T

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