View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20570_low_71 (Length: 242)

Name: NF20570_low_71
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20570_low_71
NF20570_low_71
[»] chr3 (2 HSPs)
chr3 (17-227)||(36120486-36120696)
chr3 (47-114)||(41048321-41048388)
[»] chr2 (1 HSPs)
chr2 (17-228)||(40566086-40566298)
[»] chr8 (1 HSPs)
chr8 (47-114)||(27260473-27260540)
[»] chr1 (2 HSPs)
chr1 (47-114)||(13620254-13620321)
chr1 (47-114)||(52040388-52040455)
[»] chr7 (2 HSPs)
chr7 (47-114)||(21891982-21892049)
chr7 (50-110)||(3737027-3737086)
[»] chr5 (1 HSPs)
chr5 (47-114)||(1688059-1688126)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 36120486 - 36120696
Alignment:
Q  17 actaattaacttaatttaatctaagataattatttatctcactcaaacataatcataaactatccaaaaggtgggttctacaactaaaggaactcaccgc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36120486 actaattaacttaatttaatctaagataattatttatctcactcaaacataatcataaactatctaaaaggtgggttctacaactaaaggaactcaccgc 36120585  T
Q  117 gacttatctgaccactttcaacagcttaagctccaccttctgcttaagcctctgtctgccaagctcttgcttctgtcttctccagtctcctaaatccaat 216  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  36120586 gacttatctaaccactttcaacagcttaagctccaccttctgcttaagcctctgtctgccaagctcttgcttctgtcttctccagtcccctaaatccaat 36120685  T
Q  217 tcctacttgtt 227  Q
    |||||||||||    
T  36120686 tcctacttgtt 36120696  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 41048388 - 41048321
Alignment:
Q  47 tatttatctcactcaaacataatcataaactatccaaaaggtgggttctacaactaaaggaactcacc 114  Q
    |||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||    
T  41048388 tatttatctcactcaaacataatcataaactacccaagaggtaggttctacaactaaaggaactcacc 41048321  T

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Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 40566086 - 40566298
Alignment:
Q  17 actaattaacttaatttaatctaagataattatttatctcactcaaacataatcataaactatccaaaaggtgggttctacaactaaaggaactcaccgc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40566086 actaattaacttaatttaatctaagataattatttatctcactcaaacataatcataaactatctaaaaggtgggttctacaactaaaggaactcaccgc 40566185  T
Q  117 gacttatctgaccactttcaacagcttaagctccaccttctgcttaagcctctgtctgccaagctcttgcttctgtcttctccagtctcctaaatccaa- 215  Q
    ||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  40566186 gacttatctaaccactttcaacagcttaagctccaccttcaacttaagcctctgtctgccaagctcttgcttctgtcttctccagtcccctaaatccaat 40566285  T
Q  216 ttcctacttgttc 228  Q
    |||||||||||||    
T  40566286 ttcctacttgttc 40566298  T

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Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 27260473 - 27260540
Alignment:
Q  47 tatttatctcactcaaacataatcataaactatccaaaaggtgggttctacaactaaaggaactcacc 114  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27260473 tatttatctcactcaaacataatcataaactatccaagaggtgggttctacaactaaaggaactcacc 27260540  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 13620321 - 13620254
Alignment:
Q  47 tatttatctcactcaaacataatcataaactatccaaaaggtgggttctacaactaaaggaactcacc 114  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  13620321 tatttatctcactcaaacataatcataaactacccaagaggtgggttctacaactaaaggaactcacc 13620254  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 52040388 - 52040455
Alignment:
Q  47 tatttatctcactcaaacataatcataaactatccaaaaggtgggttctacaactaaaggaactcacc 114  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  52040388 tatttatctcactcaaacataatcataaactacccaagaggtgggttctacaactaaaggaactcacc 52040455  T

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Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 21891982 - 21892049
Alignment:
Q  47 tatttatctcactcaaacataatcataaactatccaaaaggtgggttctacaactaaaggaactcacc 114  Q
    |||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||    
T  21891982 tatttatctcactcaaacataatcataaactacccaagaggtaggttctacaactaaaggaactcacc 21892049  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 3737086 - 3737027
Alignment:
Q  50 ttatctcactcaaacataatcataaactatccaaaaggtgggttctacaactaaaggaact 110  Q
    |||||||||||||| |||||||||||||| | || ||||||||||||||||||||||||||    
T  3737086 ttatctcactcaaaaataatcataaactagc-aagaggtgggttctacaactaaaggaact 3737027  T

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Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 1688059 - 1688126
Alignment:
Q  47 tatttatctcactcaaacataatcataaactatccaaaaggtgggttctacaactaaaggaactcacc 114  Q
    ||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  1688059 tatttatctcactaaaacataatcataaactacccaagaggtgggttctacaactaaaggaactcacc 1688126  T

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