View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_low_76 (Length: 238)
Name: NF20570_low_76
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_low_76 |
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Alignment Details
Target: chr5 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 21 - 201
Target Start/End: Original strand, 5598300 - 5598480
Alignment:
| Q |
21 |
aaccaccttataaaggggaggaaggatgctgatagctgggttccacagcaaaaaatatttccactctattgtggacggaaagcatatggaagcactattt |
120 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| |||||| ||||| || |||||||| |
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| T |
5598300 |
aaccaccttaaaaaggggaggaaggatgctgatagctgggtcccatagcaaaaaatgtttccactctattgtggatggaaagtatatgaaaacactattt |
5598399 |
T |
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| Q |
121 |
ggaccaaaattaca-gaaaagccctcactctcttgttcaatctaatnnnnnnnnnttaagctaattattttctttatttctt |
201 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5598400 |
ggaccaaaattacatgaaaagccctcactctcttgttcaatctaat-aaaaaaaattaagctaattattttctttatttctt |
5598480 |
T |
|
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Target: chr4 (Bit Score: 107; Significance: 9e-54; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 27301086 - 27301228
Alignment:
| Q |
20 |
gaaccaccttataaaggggaggaaggatgctgatagctgggttccacagcaaaaaatatttccactctattgtggacggaaagcatatggaagcactatt |
119 |
Q |
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||||||| ||| |||||||||||||||||||||||||||| | |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27301086 |
gaaccactttaaaaaggggaggaaggatgctgatagctggatcccacagcaaaaaatgtttccgctctattgtggacggaaagcatatggaagcactatt |
27301185 |
T |
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| Q |
120 |
tggaccaaaattaca-gaaaagccctcactctcttgttcaatc |
161 |
Q |
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| T |
27301186 |
tagaccaaaattacatgaaaagccctcactctcttgttcaatc |
27301228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 139
Target Start/End: Complemental strand, 5746505 - 5746385
Alignment:
| Q |
20 |
gaaccaccttataaaggggaggaaggatgctgatagctgggttccacagcaaaaaatatttccactctattgtggacggaaagcatatgg-aagcactat |
118 |
Q |
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||||||||||| ||| ||||| ||||||||||||||| || | |||| |||||||| |||||||||||||||| |||||||| || || ||||||| | |
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| T |
5746505 |
gaaccaccttaaaaatgggagaaaggatgctgatagccggatcgcacaccaaaaaatgtttccactctattgtgcacggaaagtctagggaaagcactgt |
5746406 |
T |
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| Q |
119 |
ttggaccaaaattacagaaaa |
139 |
Q |
| |
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|| || |||||||||| |||| |
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| T |
5746405 |
tttgaacaaaattacaaaaaa |
5746385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 29695940 - 29695878
Alignment:
| Q |
39 |
aggaaggatgctgatagctgggttccacagcaaaaaatatttccactctattgtggacggaaag |
102 |
Q |
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||||||||||| |||||||||| |||||| |||||||| |||| |||||||||| |||||||| |
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| T |
29695940 |
aggaaggatgcagatagctggg-tccacaacaaaaaatgattccgctctattgtgaacggaaag |
29695878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 165
Target Start/End: Complemental strand, 12949880 - 12949749
Alignment:
| Q |
35 |
ggggaggaaggatgctgatagctgggttccacagcaaaaaatatttccactctattgtggacggaaagcatatggaag-cactatttggaccaaaattac |
133 |
Q |
| |
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|||||||| |||| |||||||||||| || | |||||||| ||||||||||||| |||||||||||||| ||||| |||||||| || ||||||||| |
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| T |
12949880 |
ggggaggagggattctgatagctgggcctcata-caaaaaatgtttccactctattatggacggaaagcattgggaagacactattttgagcaaaattac |
12949782 |
T |
|
| Q |
134 |
a-gaaaagccctcactctcttgttcaatctaat |
165 |
Q |
| |
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| |||| || |||||||||||||||||||||| |
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| T |
12949781 |
ataaaaaaccatcactctcttgttcaatctaat |
12949749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 139
Target Start/End: Complemental strand, 18676543 - 18676423
Alignment:
| Q |
20 |
gaaccaccttataaaggggaggaaggatgctgatagctgggttccacagcaaaaaatatttccactctattgtggacggaaagcatatgg-aagcactat |
118 |
Q |
| |
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||||||||||| ||| ||||| ||||||||||||||| || | |||| |||||||| |||||||||||||||| |||||||| || || ||||||| | |
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| T |
18676543 |
gaaccaccttaaaaatgggagaaaggatgctgatagccggatcgcacaccaaaaaatgtttccactctattgtgcacggaaagtctagggaaagcactgt |
18676444 |
T |
|
| Q |
119 |
ttggaccaaaattacagaaaa |
139 |
Q |
| |
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|| || |||||||||| |||| |
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| T |
18676443 |
tttgaacaaaattacaaaaaa |
18676423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 165
Target Start/End: Complemental strand, 20950081 - 20949943
Alignment:
| Q |
32 |
aaaggggaggaaggatgctgatagctgggttccacagcaaaaaatatttccactctattgtg--gacggaaagcatatggaag-cactatttggaccaaa |
128 |
Q |
| |
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||||||||||| |||| || ||||||||| ||||| ||||||| ||||||||||||| | ||| |||||||| ||||| |||||||| || |||| |
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| T |
20950081 |
aaaggggaggagggattctaatagctgggccccacat-aaaaaatgtttccactctattatatagacagaaagcatggggaagacactattttgagcaaa |
20949983 |
T |
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| Q |
129 |
attacagaaaag---ccctcactctcttgttcaatctaat |
165 |
Q |
| |
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|||||| |||| ||||||||||||||||||||||||| |
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| T |
20949982 |
attacataaaaaaaaccctcactctcttgttcaatctaat |
20949943 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 165
Target Start/End: Original strand, 9367548 - 9367679
Alignment:
| Q |
36 |
gggaggaaggatgctgatagctgggttccacagcaaaaaatatttccactctattgtggacggaaagcatatggaa-gcactatttggaccaaaatta-c |
133 |
Q |
| |
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||||| || ||||||||||| |||| || || ||||||| ||||| |||||||||| |||||||| ||||||| ||||||||| || ||||| || | |
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| T |
9367548 |
gggagaaaagatgctgatagtcgggtcccgcacaaaaaaatgtttcccctctattgtgcacggaaagtctatggaaggcactattttgaacaaaactacc |
9367647 |
T |
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| Q |
134 |
agaaaagccctcactctcttgttcaatctaat |
165 |
Q |
| |
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||||||| ||||||| ||||| |||||||| |
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| T |
9367648 |
taaaaagccatcactctattgttaaatctaat |
9367679 |
T |
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