View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_low_77 (Length: 237)
Name: NF20570_low_77
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_low_77 |
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| [»] scaffold0643 (1 HSPs) |
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Alignment Details
Target: scaffold0643 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0643
Description:
Target: scaffold0643; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 7924 - 7704
Alignment:
| Q |
1 |
tgtgtaaaaataaacttgtttttgtatatgttataagctgtttatgtaagctaagcttggaccacttatgaaataagttggaaaatttttatgaaaaatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7924 |
tgtgtaaaaataaacttgtttttgtatatgttataagctgtttatgtaagctaagcttggaccacttatgaaataagttggaaaaattttatgaaaaatg |
7825 |
T |
|
| Q |
101 |
tcataagttctcccttacaatctcacaaagtttatgtcaatnnnnnnncttaaataagtaaatctaaaatggctcaagtttctcttcattcatgccaagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7824 |
tcataagttctcccttacaatctcacaaagtttatgtcaataaaaaaacttaaataagtaaatctaaaatggctcaagtttctctacattcatgccaagt |
7725 |
T |
|
| Q |
201 |
acatattccaccatttcaatc |
221 |
Q |
| |
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|||||||||| |||||||||| |
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| T |
7724 |
acatattccaacatttcaatc |
7704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 17054824 - 17054604
Alignment:
| Q |
1 |
tgtgtaaaaataaacttgtttttgtatatgttataagctgtttatgtaagctaagcttggaccacttatgaaataagttggaaaatttttatgaaaaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17054824 |
tgtgtaaaaataaacttgtttttgtatatgttataagctgtttatgtaagctaagcttggaccacttatgaaataagttggaaattttttatgaaaaatg |
17054725 |
T |
|
| Q |
101 |
tcataagttctcccttacaatctcacaaagtttatgtcaatnnnnnnncttaaataagtaaatctaaaatggctcaagtttctcttcattcatgccaagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17054724 |
tcataagttctcccttacaatctcacaaagtttatgtcaataaaaaaacttaaataagtaaatctaaaatggctcaagtttctcttcattcatgccaagt |
17054625 |
T |
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| Q |
201 |
acatattccaccatttcaatc |
221 |
Q |
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||||||| || |||||||||| |
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| T |
17054624 |
acatattgcaacatttcaatc |
17054604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 30014361 - 30014571
Alignment:
| Q |
1 |
tgtgtaaaaataaacttgtttttgtatatgttataagctgtttatgtaagctaagcttggaccacttatgaaataagttggaaaatttttatgaaaaatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
30014361 |
tgtgtaaaaataaacttgtttttgtatatgttataagctgtttatgtgagctaagcttggaccacttttgaaatt----------tttttatgaaaaatg |
30014450 |
T |
|
| Q |
101 |
tcataagttctcccttacaatctcacaaagtttatgtcaatnnnnnnncttaaataagtaaatctaaaatggctcaagtttctcttcattcatgccaagt |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30014451 |
tcataagttctcccttacaatctcacaaagtttatgtcaataaaaaaacttaaataagtaaatctaaaatggctcaagtttctcttcattcatgccaagt |
30014550 |
T |
|
| Q |
201 |
acatattccaccatttcaatc |
221 |
Q |
| |
|
|||||||||| |||||||||| |
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| T |
30014551 |
acatattccaacatttcaatc |
30014571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 30073604 - 30073667
Alignment:
| Q |
158 |
gtaaatctaaaatggctcaagtttctcttcattcatgccaagtacatattccaccatttcaatc |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30073604 |
gtaaatctaaaatggctcaagtttctcttcattcatgccaagtacatattccaacatttcaatc |
30073667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 30251549 - 30251484
Alignment:
| Q |
7 |
aaaataaacttgtttttgtatatgttataagctgtttatgtaagctaagcttggaccacttatgaaa |
73 |
Q |
| |
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|||||||| ||||| |||||||||||||||||||||| |||||| | |||||||||||||||||| |
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| T |
30251549 |
aaaataaagttgttattgtatatgttataagctgttttcataagct-atcttggaccacttatgaaa |
30251484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 34430556 - 34430520
Alignment:
| Q |
7 |
aaaataaacttgtttttgtatatgttataagctgttt |
43 |
Q |
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|||||||| |||||||||||||||||||||| ||||| |
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| T |
34430556 |
aaaataaaattgtttttgtatatgttataaggtgttt |
34430520 |
T |
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