View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_low_79 (Length: 235)
Name: NF20570_low_79
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_low_79 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 11 - 219
Target Start/End: Complemental strand, 37292280 - 37292072
Alignment:
| Q |
11 |
agtagcataggtagtggttgttgttgaattgtagcatcaagaaggaacgaagcagctagttggttgcgaaatactgttggaaatgttggaggaaaagaca |
110 |
Q |
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| T |
37292280 |
agtaacatagatagtggttgttgttgaattgtagcatcaagaaggaacgaagcagctagttggttgcgaaatactgttggaaatgttggaggaaaagaca |
37292181 |
T |
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| Q |
111 |
tgttggatgaaccttctgaagaagatttcagaaatgcattgcgcagtggcattatcctttgtaatgctctcaacaaaattcaacctggtgctgttcccaa |
210 |
Q |
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| T |
37292180 |
tgttggatgaaccttctgaagaagatttcagaaatgcattgcgcagtggcattatcctttgtaatgctctcaacaaaattcaacctggtgctgttcccaa |
37292081 |
T |
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| Q |
211 |
ggtatatat |
219 |
Q |
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| T |
37292080 |
ggtatatat |
37292072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 50 - 217
Target Start/End: Original strand, 46213962 - 46214129
Alignment:
| Q |
50 |
agaaggaacgaagcagctagttggttgcgaaatactgttggaaatgttggaggaaaagacatgttggatgaaccttctgaagaagatttcagaaatgcat |
149 |
Q |
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| T |
46213962 |
agaaggtatgaagcagctggttggttgcgaaaaacggttggagtagttggagggaaagacttgccagctgaaccttctgaagaagattttagaatcggtt |
46214061 |
T |
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| Q |
150 |
tgcgcagtggcattatcctttgtaatgctctcaacaaaattcaacctggtgctgttcccaaggtatat |
217 |
Q |
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| T |
46214062 |
tgcgcagtggaattgtcctctgtaatgctctcaacaaaattcaacctggagcagtactcaaggtatat |
46214129 |
T |
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