View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_low_81 (Length: 224)
Name: NF20570_low_81
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_low_81 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 6146817 - 6147002
Alignment:
| Q |
20 |
atgatcttgtacataaacaattaatgtcacaccaagaatgagtccactacaaagtccacaattccaccaattgaaaaatgacattttttgccttctttct |
119 |
Q |
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| T |
6146817 |
atgatcttgtacataaacaattaatgtcacaccaagaatgagtccactacaaagtccacaattccaccaattgaaaaatgacattttttgccttctttct |
6146916 |
T |
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| Q |
120 |
tcaatatgattatcatcaaattgatcagctccaaaactctctaaagaaggtttgtgtcctcctgttcctattgatattaaatatat |
205 |
Q |
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| T |
6146917 |
tcaatatgattatcatcaaattgatcagctccaaaactctctaaagaaggtttgtgtcctcctgttcctattgatattaaatatat |
6147002 |
T |
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Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 23 - 199
Target Start/End: Original strand, 23693937 - 23694113
Alignment:
| Q |
23 |
atcttgtacataaacaattaatgtcacaccaagaatgagtccactacaaagtccacaattccaccaattgaaaaatgacattttttgccttctttcttca |
122 |
Q |
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| T |
23693937 |
atcttgtatataaacaataagggtcactcctagaataagtccactacatagagcacaattccaccaattgaaaaaggacattttttgtttcctttcttca |
23694036 |
T |
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| Q |
123 |
atatgattatcatcaaattgatcagctccaaaactctctaaagaaggtttgtgtcctcctgttcctattgatattaa |
199 |
Q |
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| T |
23694037 |
acatgatcctcatcaaattggtcagctccaaagctttccaaggaaggtttgtggcctccagttgctattgatattaa |
23694113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 31065323 - 31065423
Alignment:
| Q |
81 |
ttccaccaattgaaaaatgacattttttgccttctttcttcaatatgattatcatcaaattgatcagctccaaaactctctaaagaaggtttgtgtcctc |
180 |
Q |
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|||||||| ||||| || |||||||| | | | |||||||| | |||| ||||||||||||||||||||||| || || || | ||||||||||||| |
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| T |
31065323 |
ttccaccagttgaagaaagacattttcttcttcctttcttcgacgtgatcttcatcaaattgatcagctccaaagctttccaagcatggtttgtgtcctc |
31065422 |
T |
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| Q |
181 |
c |
181 |
Q |
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| T |
31065423 |
c |
31065423 |
T |
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