View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_low_83 (Length: 223)
Name: NF20570_low_83
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_low_83 |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 37709145 - 37709283
Alignment:
| Q |
15 |
atcatagtgatttgagttgatgtgcgttttgtttgtcatttacttgaaattgttttcagcctttggtgtttgtatctgtgtccatgcttgatgtgtaatg |
114 |
Q |
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| T |
37709145 |
atcataatgatttgagttgatgtgcgttttgtttgtcatttacttgaaattgttttcagcctttggtgtttgtatctgtgtccatgcttgatgtgtaatg |
37709244 |
T |
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| Q |
115 |
tggtctttctcatatcataatgattcaatttcctgtgta |
153 |
Q |
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| T |
37709245 |
tggtctttctcatatcataatgattcaatttcctgtgta |
37709283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 37592007 - 37592077
Alignment:
| Q |
153 |
atttatgccgactatttgatgaaaggattaggaagtacaatattcagcatcatcattttcgaaggcatgct |
223 |
Q |
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| T |
37592007 |
atttatgccgactatttgatgaaaggattaggaagtacaatattcagcatcatcattttcgaaggcatgct |
37592077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 37694396 - 37694466
Alignment:
| Q |
153 |
atttatgccgactatttgatgaaaggattaggaagtacaatattcagcatcatcattttcgaaggcatgct |
223 |
Q |
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| T |
37694396 |
atttatgccgactatttgatgaaaggattaggaagtacaatattcagcatcatcattttcgaaggcatgct |
37694466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 37530848 - 37530915
Alignment:
| Q |
156 |
tatgccgactatttgatgaaaggattaggaagtacaatattcagcatcatcattttcgaaggcatgct |
223 |
Q |
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| T |
37530848 |
tatgccgactatttgatgaaagaattaggaagtacaatattcagcatcatcattttcgaaggcatgct |
37530915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 37591962 - 37592011
Alignment:
| Q |
6 |
atggacatcatcatagtgatttgagttgatgtgcgttttgtttgtcattta |
56 |
Q |
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| T |
37591962 |
atggacat-atcatagtgatttgagttgatgtgcgttttgtttgtcattta |
37592011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 37694351 - 37694400
Alignment:
| Q |
6 |
atggacatcatcatagtgatttgagttgatgtgcgttttgtttgtcattta |
56 |
Q |
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| T |
37694351 |
atggacat-atcatagtgatttgagttgatgtgcgttttgtttgtcattta |
37694400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 37529882 - 37529931
Alignment:
| Q |
6 |
atggacatcatcatagtgatttgagttgatgtgcgttttgtttgtcattta |
56 |
Q |
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| T |
37529882 |
atggacat-atcatagtgatttgagttgatgtgcgatttgtttgtcattta |
37529931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 37709283 - 37709315
Alignment:
| Q |
191 |
aatattcagcatcatcattttcgaaggcatgct |
223 |
Q |
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| T |
37709283 |
aatattcagcatcatcattttcaaaggcatgct |
37709315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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