View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_low_9 (Length: 489)
Name: NF20570_low_9
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 421; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 11 - 471
Target Start/End: Complemental strand, 42031851 - 42031391
Alignment:
| Q |
11 |
cagagaggagagctttaagcacaactaaatatcacaaagcattcgcttgagaaaatccacacttacttccagttaagttcttttgctgctttttctgttg |
110 |
Q |
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| T |
42031851 |
cagagaggagagctttaagaacaactaaatatcacaaagcattcgcttgagaaaatccacacttacttccagttaagttcttttgctgctttttctgttg |
42031752 |
T |
|
| Q |
111 |
atgcataaacaacttcagcatctccaggtctccgatcagcctttacaattggaattttctaaatagtnnnnnnnntgtataaattaattagtcctgtatt |
210 |
Q |
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| T |
42031751 |
atgcataaacaacttcagcatctccaggtctccgatcagcctttacaattggaattttctaaatagtaaaaaaaatgtataaattaattagtcctgtact |
42031652 |
T |
|
| Q |
211 |
aaacaatagcttaatctgaatataaataaatgagtttgttcaatatgttcagctatgaaactgaataacagttgaatagaaagatcagatgtttctttgc |
310 |
Q |
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| T |
42031651 |
aaacaatagcttaatctgaatataaataaatgagtttgttcaatatgttcagctatgaaactgaataacagttgaatagaaagatcagatgtttctttgc |
42031552 |
T |
|
| Q |
311 |
cgacacattttgcacatgttgtgtaaatgaacttgtttcacattaattttttcatttccttgtatatcttataaaaatacaactgaccttgttagatatc |
410 |
Q |
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| T |
42031551 |
cgacacattttgcacatgttgtgtaaatgaacttgtttcacattaattttttcatttccttgtatatcttataaaaatacaactgaccttgttagatatc |
42031452 |
T |
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| Q |
411 |
ccataatatttaaaaaatcatctatcttagggccaaagtgaaagatttttatagtttactt |
471 |
Q |
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| T |
42031451 |
ccataatatttaaaaaatcatctatcttagggccaaagtgaaagagttttttagtttactt |
42031391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 361 - 425
Target Start/End: Original strand, 41807173 - 41807237
Alignment:
| Q |
361 |
ttcatttccttgtatatcttataaaaatacaactgaccttgttagatatcccataatatttaaaa |
425 |
Q |
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||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| |||| |
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| T |
41807173 |
ttcatttccttgtatatcttataaaaatacagctgactttgtttgatatcccataatattaaaaa |
41807237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 246 - 321
Target Start/End: Original strand, 41807091 - 41807166
Alignment:
| Q |
246 |
ttgttcaatatgttcagctatgaaactgaataacagttgaatagaaagatcagatgtttctttgccgacacatttt |
321 |
Q |
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| T |
41807091 |
ttgttcaatctgttcagctatgaaaatgaataacagttgcatagaaagattagctgttcctttactgacacatttt |
41807166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 71 - 170
Target Start/End: Original strand, 2126002 - 2126101
Alignment:
| Q |
71 |
acttacttccagttaagttcttttgctgctttttctgttgatgcataaacaacttcagcatctccaggtctccgatcagcctttacaattggaattttct |
170 |
Q |
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||||||||||| ||||||||| || | ||||||||||| ||||||||||||| ||||||||| |||||||| ||| ||||||| |||| ||||||||||| |
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| T |
2126002 |
acttacttccacttaagttctctttcagctttttctgtggatgcataaacaatttcagcatcaccaggtctacgaccagccttcacaagtggaattttct |
2126101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 69 - 170
Target Start/End: Original strand, 2130618 - 2130719
Alignment:
| Q |
69 |
acacttacttccagttaagttcttttgctgctttttctgttgatgcataaacaacttcagcatctccaggtctccgatcagcctttacaattggaatttt |
168 |
Q |
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||||||||||||| ||||||||| || | ||||||| ||||||||||||||||| ||||||||| |||||||| || ||||||| |||| ||||||||| |
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| T |
2130618 |
acacttacttccacttaagttctctttcagctttttttgttgatgcataaacaatttcagcatcaccaggtctacggccagccttcacaagtggaatttt |
2130717 |
T |
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| Q |
169 |
ct |
170 |
Q |
| |
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|| |
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| T |
2130718 |
ct |
2130719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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