View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20571_high_1 (Length: 630)
Name: NF20571_high_1
Description: NF20571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20571_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 543; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 11 - 588
Target Start/End: Original strand, 54140491 - 54141069
Alignment:
| Q |
11 |
gatgaagggtggacaggatgtcctatcaagggccgttgtattggtacatgcaggcaaataatgataatgccacattttggtctggagctaaagtactttg |
110 |
Q |
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| T |
54140491 |
gatgaggggtggacaggatgtcctatcaagggccgttgtattggtacatgcaggcaaataatgataatgccacattttggtctggggctaaagtactttg |
54140590 |
T |
|
| Q |
111 |
aatatttgccatgtaaactgctattactttggttctattataattttttatccatgcaggtagaaatgatacttcaagccctggattatgaagacggtga |
210 |
Q |
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| T |
54140591 |
aatattttccatgtaaactgctgttactttggttctattataattttttatccatgcaggtagaaatgatacttcaagccctggattatgaagacggtga |
54140690 |
T |
|
| Q |
211 |
gtggattcttgaaatttatcttttcactttattacaatagtatacaggccttatcaaaccatttgaattgtttgtcaatctttgaacattaatgatcttc |
310 |
Q |
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| T |
54140691 |
gtggattcttgaaatttatcttttcactttattacaatagtatacaggccttatcaaaccatttgaattgtttgtcaatctttgaacattaatgatcttc |
54140790 |
T |
|
| Q |
311 |
aagattaatgtacattttagtaagaaatttatgcaaataaccttgaacttagtacattttacacttctggcagttataactaagatttacatcttcaagt |
410 |
Q |
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| T |
54140791 |
aagattaatgtatattttagtaagaaatttatgcaaataacattgaacttagtacattttacacttctggcagttataactaagatttacatcttcaagt |
54140890 |
T |
|
| Q |
411 |
ttccttgtttgttatctatagtctacggtcattcatggatcatatgacagtagtgatgatgatgattaacagctctgaatttagttgtgcattcatgtat |
510 |
Q |
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| T |
54140891 |
ttccttgtttgttatctataggctacggtcattcatggatcatatgacagtagtgatgatgatgattaacagctctgaatttagttgtgcattcatgtat |
54140990 |
T |
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| Q |
511 |
ttcactcatgttttcgaactgttttttaggtagtttggtgtcatgttatgccatttaatag-attgctttgccttccat |
588 |
Q |
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| T |
54140991 |
ttcactcatgttttcgaactgttttttaggtagtttggtgtcatgttatgccatttaatagaattgctttgccttccat |
54141069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 228 - 613
Target Start/End: Original strand, 54127567 - 54127978
Alignment:
| Q |
228 |
atcttttcactttattacaatagtatacaggccttatcaaaccatttgaattgtttgtcaatctttgaac------------attaatgatcttcaagat |
315 |
Q |
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| T |
54127567 |
atcttgtcactttattacaattgtagacagtccttatgaaaccatttgaattgtttgtcaatctttgaatttgaatttgaatatgaatcatcttcaagat |
54127666 |
T |
|
| Q |
316 |
taatgtacattttagtaagaaatttatgcaaataaccttgaacttagtacattttacacttctggcagtt-------ataactaagatttacatcttcaa |
408 |
Q |
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| T |
54127667 |
taatgtatatgttagtaagaaacttatgcaaataatattgaacttcgtacattttacacttttggcagttataagttataactaagatttacatcttcaa |
54127766 |
T |
|
| Q |
409 |
gtttccttgtttgttatctatagtctacggtcattcatggatcatatgacagtagtgatgatgatgattaacagctctgaatttagttgtgcattcatgt |
508 |
Q |
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| T |
54127767 |
gtttccctgtttgttatctataggctaccgttagtgatgaatcgtattacaatagtaatggtgatgattaacagctttgaatatagttgtgaatgcatgt |
54127866 |
T |
|
| Q |
509 |
atttcactcatgttttcgaactgttttttaggtagtttggtgtcatgttatgccatttaatag-attgctttgccttc------catccaaccattgata |
601 |
Q |
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| T |
54127867 |
agtttactcctgttttagaactgttttataggtagtttggtgtcattttatgccatttgatagaactgctttgtcttcaatcagcttccaagcattgata |
54127966 |
T |
|
| Q |
602 |
aaacctaagtag |
613 |
Q |
| |
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| T |
54127967 |
aaacctaagtag |
54127978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 9 - 234
Target Start/End: Original strand, 54127098 - 54127327
Alignment:
| Q |
9 |
gagatgaagggtggacaggatgtcctatcaagggccgttgtattggtacatgcaggcaaataatgataatgccacattttggtctggagctaaagtactt |
108 |
Q |
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|||||||||||||||||||||||||||||||||| |||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
54127098 |
gagatgaagggtggacaggatgtcctatcaaggggtgttgaattagtacatgcaagcaaataatgataatgccacattttggtctggagctaaagtacct |
54127197 |
T |
|
| Q |
109 |
tgaatatttgccatgtaaactgcta-ttactttggttct---attataattttttatccatgcaggtagaaatgatacttcaagccctggattatgaaga |
204 |
Q |
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| T |
54127198 |
tgaatttttgccatgtaaactgctagttactctggttctataataataatttttgtttcatacaggtagaaatgatacttcaagcgctggattatgaaga |
54127297 |
T |
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| Q |
205 |
cggtgagtggattcttgaaatttatctttt |
234 |
Q |
| |
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| T |
54127298 |
tggtgagtgaattcttgaattttatctttt |
54127327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 228 - 360
Target Start/End: Original strand, 54151936 - 54152063
Alignment:
| Q |
228 |
atcttttcactttattacaatagtatacaggccttatcaaaccatttgaattgtttgtcaatctttgaacattaatgatcttcaagattaatgtacattt |
327 |
Q |
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| T |
54151936 |
atcttttcacttcattacaatagta--ccgaccttatcaaaccatttgaattgcttgtcaatca---aacattaatcatcttcaggattaatgtatattc |
54152030 |
T |
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| Q |
328 |
tagtaagaaatttatgcaaataaccttgaactt |
360 |
Q |
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|||| | |||||||||||||||| |||||||| |
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| T |
54152031 |
tagtgacaaatttatgcaaataatattgaactt |
54152063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 391 - 436
Target Start/End: Original strand, 54152077 - 54152122
Alignment:
| Q |
391 |
taagatttacatcttcaagtttccttgtttgttatctatagtctac |
436 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54152077 |
taaaatttacatcttcaagtttccttgtttgttatctataggctac |
54152122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 537 - 572
Target Start/End: Original strand, 54153204 - 54153239
Alignment:
| Q |
537 |
taggtagtttggtgtcatgttatgccatttaataga |
572 |
Q |
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| T |
54153204 |
taggtagtttggtgtcatgttatgccatttgataga |
54153239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 50949892 - 50949942
Alignment:
| Q |
228 |
atcttttcactttattacaatagtatacaggccttatcaaaccatttgaat |
278 |
Q |
| |
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||||||||||||||||||||||| ||||| | |||||| |||||| ||||| |
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| T |
50949892 |
atcttttcactttattacaataggatacatgtcttatcgaaccatatgaat |
50949942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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