View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20571_high_2 (Length: 453)
Name: NF20571_high_2
Description: NF20571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20571_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 99 - 432
Target Start/End: Original strand, 3427154 - 3427495
Alignment:
| Q |
99 |
tttgctattgacatggttgttcagatttttagttcaaatagtttgcaccagaggagtttagggttaaaattgttgaacttaataaattagattgagttgt |
198 |
Q |
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| T |
3427154 |
tttgctattgacatggttgttcagatttttagttcaaatagtttgcacgagaggagtttagggttaaaattgttgaacttaataaattagattgagttgt |
3427253 |
T |
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| Q |
199 |
gtgtgaatgagagatgtaagtcagttaacttaataatttgttcaaacagatgcatgctcacacaaacaatgtataaagaagatgatattattgtagaagc |
298 |
Q |
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| T |
3427254 |
gtgtgaatgagagatgtaagtcagttaacttaataatgtgttcaaacagatgcatgctcacacaaacaatgtataaagaagatgatattattgtagaagc |
3427353 |
T |
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| Q |
299 |
aacaaatatttctactgta--------aaaatagatgcaacttcagcatgtgtaaaacacttaatcaacaactaatatcaaagaggatgctacaagaaat |
390 |
Q |
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| T |
3427354 |
aacaaatatttctactgtaaagattctaaaatagatgcaacttcagcatgtgtaaaacacttaatcaacaactaatatcaaagaggatgctacaagaaat |
3427453 |
T |
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| Q |
391 |
atgatccaatacattgatggatataattggatcatcttcgtg |
432 |
Q |
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| T |
3427454 |
atgatccaatacattgatggatataattggatcatcttcgtg |
3427495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 3427006 - 3427088
Alignment:
| Q |
13 |
catcacacggacaaacatgtaagggtagtgggactcattttactttaatttattcatgtatttaatcgaatgaaaaatattaa |
95 |
Q |
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| T |
3427006 |
catcacacggacaaacatgtaagggtagtgggactcattttactttaatttattcatgtatttaatcgaatgaaaaatattaa |
3427088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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