View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20571_low_10 (Length: 255)
Name: NF20571_low_10
Description: NF20571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20571_low_10 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 30843841 - 30844083
Alignment:
| Q |
13 |
tgagatgaacctacaaaacaaattaaaggaccaagttgattggttacctgattcattagggaagttatcaactttactcactttggatttgtcccaaaac |
112 |
Q |
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| T |
30843841 |
tgagctgaacctacaaaacaaattaaaggaccaagttgattggttacctgattcattagggaagttatcaactttactcactttggatttgtcccaaaac |
30843940 |
T |
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| Q |
113 |
cggatcataaccttgcctttcacaataggcaacctttcatctttaacctatttggatttacattcaaatcaaatcacacagctaccagattctattgaaa |
212 |
Q |
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| T |
30843941 |
cggatcataaccttgcctttcacaataggcaacctttcatctttaacctatttggatttacattcaaatcaaatcacacagctaccagattctattgaaa |
30844040 |
T |
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| Q |
213 |
atctcattaacttgactcacttaaatgttagtgcaaacatgct |
255 |
Q |
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| T |
30844041 |
atctcattaacttgactcacttaaatgttagtgcaaacatgct |
30844083 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 9983041 - 9983000
Alignment:
| Q |
40 |
ggaccaagttgattggttacctgattcattagggaagttatc |
81 |
Q |
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| T |
9983041 |
ggaccaagttgattggttacctgattctatagggaagttatc |
9983000 |
T |
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