View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20571_low_15 (Length: 220)
Name: NF20571_low_15
Description: NF20571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20571_low_15 |
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| [»] scaffold0008 (2 HSPs) |
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Alignment Details
Target: scaffold0008 (Bit Score: 120; Significance: 1e-61; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 50 - 205
Target Start/End: Complemental strand, 7619 - 7463
Alignment:
| Q |
50 |
aggaaatgaattggaaatgatgataagtgcgttgtattgatatgatataaacgataattaagttgatagaaatccatcctagaaatctatcttgattgat |
149 |
Q |
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| T |
7619 |
aggaaatgaattggaaatgatgataagtgtgttgtattgatatgatataaacgataattaagttgatagaaatccatcctagaaatctatcttgattgat |
7520 |
T |
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| Q |
150 |
atgtttattcttnnnnnnnttagttactt-aagactagtctttctcttttctcattg |
205 |
Q |
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| T |
7519 |
atgtttattctttaaaaaaatagttacttaaagactagtctttctcttttctcattg |
7463 |
T |
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Target: scaffold0008; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 62 - 205
Target Start/End: Complemental strand, 18166 - 18027
Alignment:
| Q |
62 |
ggaaatgatgataagtgcgttgtattgatatgatataaacgataattaagttgatagaaatccatcctagaaatctatcttgattgatatgtttattctt |
161 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
18166 |
ggaaatgatgataagtgcgttgtat-----cgatataaactataattaagttgatagaaatccatcctagatatctatcttgattgatatgtttattctt |
18072 |
T |
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| Q |
162 |
-nnnnnnnttagttacttaagactagtctttctcttttctcattg |
205 |
Q |
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| T |
18071 |
aaaaaaaattagttacttaagactagtctttctcttttcttattg |
18027 |
T |
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