View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20571_low_4 (Length: 421)
Name: NF20571_low_4
Description: NF20571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20571_low_4 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 162 - 421
Target Start/End: Original strand, 9437371 - 9437630
Alignment:
| Q |
162 |
tgagttgtgtatgtaagtggtggcggaagaagaaaggaagagacgtacggagcctctatacacacgcttagaaacaaattctttcttactagaagttaaa |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9437371 |
tgagttgtgtatgtaagtggtggcggaagaagaaaggaagagacgtacggagcctctatacacacgcttagaaacaaattctttcttactagaagttaaa |
9437470 |
T |
|
| Q |
262 |
ttcagtttgctaattaaccaacactatcttcgtgtaggtttcaacataaaaccagaacacacttctttatcctcctccaagtgtatgtagttagacggtg |
361 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9437471 |
ttcaatttgctaattaactaacactatcttcgtgtaggtttcaacataaaaccagaacacgcttctttatcctcctccaagtgtatgtagttagacggtg |
9437570 |
T |
|
| Q |
362 |
taaggatattaattggttgttgtttgaaaattgtgaaataaggtacttatattttgtttc |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9437571 |
taaggatattaattggttgttgtttgaaaattgtgaaataaggtacttatattttgtttc |
9437630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 9437234 - 9437165
Alignment:
| Q |
1 |
cggctttagccatccgcaccaccctttctagatctcccaaaggttgctgcatcggtgaactgtggttatt |
70 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
9437234 |
cggctttagccatccgcaccaccctttctagatctcccgaaggttgctgcatcggtggactgtggttatt |
9437165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 33758616 - 33758579
Alignment:
| Q |
1 |
cggctttagccatccgcaccaccctttctagatctccc |
38 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
33758616 |
cggctttagccatccgcaccatcctttccagatctccc |
33758579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 50590425 - 50590359
Alignment:
| Q |
1 |
cggctttagccatccgcaccaccctttctagatctcccaaaggttgctgcatcggtgaactgtggtt |
67 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||| |||||| || |||||| ||||||||| |
|
|
| T |
50590425 |
cggctttagccatccgcaccacactttccagatctcccggaggttgtcgcgtcggtggactgtggtt |
50590359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 51406934 - 51406970
Alignment:
| Q |
1 |
cggctttagccatccgcaccaccctttctagatctcc |
37 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
51406934 |
cggctttagccatccgcaccatcctttccagatctcc |
51406970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 15118100 - 15118133
Alignment:
| Q |
5 |
tttagccatccgcaccaccctttctagatctccc |
38 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
|
|
| T |
15118100 |
tttagccatccgcaccaccctttccagatctccc |
15118133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University