View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20571_low_6 (Length: 381)
Name: NF20571_low_6
Description: NF20571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20571_low_6 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 13 - 381
Target Start/End: Original strand, 40330467 - 40330837
Alignment:
| Q |
13 |
catcaatagtttactatggctgctatactatgtctatgatcatgttacacaagtaatagttattgtgtctttgattattttaaaatagtaactatttttg |
112 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40330467 |
catcaatagtttactatggctgctaaactatttctatgatcatgttacacaagtaatagttaatgtgtctttgattattttaaaatagtaactatttttg |
40330566 |
T |
|
| Q |
113 |
taactgctttttaaattagcnnnnnnnnn-gtctatgatcatgttactcaagttaatagtttacaacatcaaataccaattatcaacaatagcattaaac |
211 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40330567 |
taactgctttttaaattagcttttttttttgtctatgatcatgttactcaagttaatagtttacaacatcaaataccaattatcaacaatagcattaaac |
40330666 |
T |
|
| Q |
212 |
aaattgttttctaattgttgaccnnnnnnnnnnnnnn-gatcaacagcaacagcatatggcacttgaaggtgtgggaaacatgcatggacaatggattta |
310 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40330667 |
aaattgttttctaattgttgaccttttttttcacttttgatcaacagcaacagcatatggcacttgaaggtgtgggaaacatgcatggacaatggattta |
40330766 |
T |
|
| Q |
311 |
accacatcatgaggtccatcataagggatttggtttgcaaatgcagcttgatttacgtgtgtttcctaaat |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40330767 |
accacatcatgaggtccatcataagggatttggtttgcaaatgcagtttgatttacgtgtgtttcctaaat |
40330837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University