View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20571_low_7 (Length: 359)
Name: NF20571_low_7
Description: NF20571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20571_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 49 - 341
Target Start/End: Original strand, 9776368 - 9776660
Alignment:
| Q |
49 |
gaatcattgctactatcctccggcgaagcaacagccttaaccatcatacgagctgctttagccgccgcagcttgaatatccctagcagtacacaaagacg |
148 |
Q |
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| T |
9776368 |
gaatcattgctactatcctccggcgaagcaacagccttaaccatcatacgagctgctttagccgccgcagcttgaatatccctagcagtacacaaagacg |
9776467 |
T |
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| Q |
149 |
gcggaggaagcaccggcagacggtgcacttcatcaggaaaattcagctgtgctttacaacctttcaaacaatatgcagcaacatcataagcctttgcagc |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9776468 |
gcggaggaagcaccggcagacggtgcacttcatcaggaaaattcagctgtgctttacaacctttcaaacaatatgcagcaacatcataagcctttgcagc |
9776567 |
T |
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| Q |
249 |
catctccggcgccggaaaagaccctagccatattcttgacttttttcttggctctctaatctctgacacccattttccccaccgccttttcct |
341 |
Q |
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| T |
9776568 |
catctccggcgccggaaaagaccctagccatattcttgacttttttcttggctctctaatctctgacacccattttccccaccgccttttcct |
9776660 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 41521749 - 41521694
Alignment:
| Q |
274 |
agccatattcttgacttttttcttggctctctaatctctgacacccattttcccca |
329 |
Q |
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| T |
41521749 |
agccaaattcttgatttttttcttggctctctaatctctgatacccatttgcccca |
41521694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 274 - 329
Target Start/End: Original strand, 16357871 - 16357926
Alignment:
| Q |
274 |
agccatattcttgacttttttcttggctctctaatctctgacacccattttcccca |
329 |
Q |
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| T |
16357871 |
agccatattcttgacttctttcttggctcacgaatttcagatacccattttcccca |
16357926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 329
Target Start/End: Original strand, 3996430 - 3996488
Alignment:
| Q |
271 |
cctagccatattcttgacttttttcttgg-ctctctaatctctgacacccattttcccca |
329 |
Q |
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|||||||| |||||||| ||||||||||| ||||||||| ||||| |||||||||||||| |
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| T |
3996430 |
cctagccaaattcttga-ttttttcttgggctctctaatttctgaaacccattttcccca |
3996488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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