View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20572_high_1 (Length: 692)
Name: NF20572_high_1
Description: NF20572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20572_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 599 - 675
Target Start/End: Original strand, 18841831 - 18841907
Alignment:
| Q |
599 |
actattttatgcaatcgataattcacaacattggttaaaatctcgtatagtacacaacatgttttaagagctcaatg |
675 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18841831 |
actattttatgcaatcgaaaattcacaacattggttaaaatctcgtatagtacacaacatgttttaagagctcaatg |
18841907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 14248302 - 14248347
Alignment:
| Q |
227 |
ctccaagacaccacctcggattccaccgccattcgtaatacaaaca |
272 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
14248302 |
ctccaagataccatctcggattccaccgccattcataatacaaaca |
14248347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 33392098 - 33392054
Alignment:
| Q |
229 |
ccaagacaccacctcggattccaccgccattcgtaatacaaacat |
273 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
33392098 |
ccaagacaccacctcggattccacctccattcgtaaagcaaacat |
33392054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 500 - 565
Target Start/End: Original strand, 4254323 - 4254388
Alignment:
| Q |
500 |
ccaagtcaccttacaatgtaagaataaatgatttgtcgactcctccacctcattacaaaaaacaca |
565 |
Q |
| |
|
|||||||||| ||||||| || || | ||| |||| |||||||||||||||||||||| |||||| |
|
|
| T |
4254323 |
ccaagtcaccctacaatgcaaaaagaggtgacttgtggactcctccacctcattacaaagaacaca |
4254388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 491 - 565
Target Start/End: Original strand, 50192400 - 50192475
Alignment:
| Q |
491 |
ccaaatcctccaagtcaccttacaatgtaagaataaatgatttgtcgactcc-tccacctcattacaaaaaacaca |
565 |
Q |
| |
|
||||||| ||||| |||| |||||||| || || | |||||| || |||||| ||||||||||||||||||||||| |
|
|
| T |
50192400 |
ccaaatcttccaattcacattacaatgcaaaaagagatgattggtggactccctccacctcattacaaaaaacaca |
50192475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University