View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20572_high_6 (Length: 252)
Name: NF20572_high_6
Description: NF20572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20572_high_6 |
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| [»] scaffold0591 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 41 - 235
Target Start/End: Original strand, 28701301 - 28701494
Alignment:
| Q |
41 |
agctatattaaggttcgttttaggcagttgattctttttccagttgtcttgtcttgttttttagccatattattaaggttcgttttttgttttggattgt |
140 |
Q |
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| T |
28701301 |
agctatattaaggttcgttttaggtagttgattctttttccagttgtcttgtcttgttttttagcca---tattaaggttcgttttttgttttggattgt |
28701397 |
T |
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| Q |
141 |
tgtcaatcccccactattttttgtattgtatcactc--aatataattgtatttatttcctggcaaagtgtcatcagtcattttttataggtaataac |
235 |
Q |
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| T |
28701398 |
tgtcaattccccactattttttgtattgtatcactcataatataattgtatttctttcctggcaaagtgtcatcagtcattttttataggtaataac |
28701494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 73 - 177
Target Start/End: Original strand, 28626347 - 28626449
Alignment:
| Q |
73 |
tctttttccagttgtcttgtcttgttttttagccatattattaaggttcgttttttgttttggattgttgtcaatcccccac-tattttttgtattgtat |
171 |
Q |
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| T |
28626347 |
tctttttccagttgtcatgtcttgttttttagctatattg---aagttcgtttttggttttcgattgttgtcaatcccccactttttttttgtattgtat |
28626443 |
T |
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| Q |
172 |
cactca |
177 |
Q |
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|||||| |
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| T |
28626444 |
cactca |
28626449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 164
Target Start/End: Original strand, 28712255 - 28712360
Alignment:
| Q |
61 |
taggcagttgattctttttccagttgtcttgtcttgtttttt-agccatattattaaggttcgttttttgttttgg---attgttgtcaatc-ccccact |
155 |
Q |
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| T |
28712255 |
taggtagttgaatatttttccagttgtcttgtcttgtttttttagctatattg---aggttcgtttttggttttggaatattgttgtcaatcagctcact |
28712351 |
T |
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| Q |
156 |
attttttgt |
164 |
Q |
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| T |
28712352 |
attttttgt |
28712360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 164
Target Start/End: Original strand, 28719602 - 28719707
Alignment:
| Q |
61 |
taggcagttgattctttttccagttgtcttgtcttgtttttt-agccatattattaaggttcgttttttgttttgg---attgttgtcaatc-ccccact |
155 |
Q |
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|||| |||||| | |||||||||||||||||||||||||||| ||| ||||| |||||||||||| ||||||| ||||||||||||| | |||| |
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| T |
28719602 |
taggtagttgaatatttttccagttgtcttgtcttgtttttttagctatattg---aggttcgtttttggttttggaatattgttgtcaatcagctcact |
28719698 |
T |
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| Q |
156 |
attttttgt |
164 |
Q |
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||||||||| |
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| T |
28719699 |
attttttgt |
28719707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 164
Target Start/End: Original strand, 28727244 - 28727349
Alignment:
| Q |
61 |
taggcagttgattctttttccagttgtcttgtcttgtttttt-agccatattattaaggttcgttttttgttttgg---attgttgtcaatc-ccccact |
155 |
Q |
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|||| |||||| | |||||||||||||||||||||||||||| ||| ||||| |||||||||||| ||||||| ||||||||||||| | |||| |
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| T |
28727244 |
taggtagttgaatatttttccagttgtcttgtcttgtttttttagctatattg---aggttcgtttttggttttggaatattgttgtcaatcagctcact |
28727340 |
T |
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| Q |
156 |
attttttgt |
164 |
Q |
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||||||||| |
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| T |
28727341 |
attttttgt |
28727349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 28626495 - 28626532
Alignment:
| Q |
197 |
ctggcaaagtgtcatcagtcattttttataggtaataa |
234 |
Q |
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|||||||||||| ||||||||||||||||| ||||||| |
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| T |
28626495 |
ctggcaaagtgttatcagtcattttttatatgtaataa |
28626532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0591 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0591
Description:
Target: scaffold0591; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 177
Target Start/End: Complemental strand, 5003 - 4886
Alignment:
| Q |
58 |
ttttaggcagttgattctttttccagttgtcttgtcttgtttttt-agccatattattaaggttcgttttttgttttggattgttgtcaatcccccacta |
156 |
Q |
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||||||| ||||| ||||||||||||||||||||||| |||||| ||| ||||| | |||| ||||| |||||||||||||||||||||||||||| |
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| T |
5003 |
ttttaggtagttgtctctttttccagttgtcttgtcttatttttttagctatattg---aagttcatttttggttttggattgttgtcaatcccccacta |
4907 |
T |
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| Q |
157 |
ttttttgtattgtatcactca |
177 |
Q |
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| T |
4906 |
ttttttgtattgtatcactca |
4886 |
T |
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