View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20572_low_10 (Length: 227)
Name: NF20572_low_10
Description: NF20572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20572_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 102 - 214
Target Start/End: Complemental strand, 36846069 - 36845957
Alignment:
| Q |
102 |
aactgttctttaaatctctccacggcctttaactatataaccaaggctcctctctattctaccattagttatcgatgtgggacaataaactccgtcattc |
201 |
Q |
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| T |
36846069 |
aactgttctttaaatctctccacggcctttaactatataatcaaggctcctctctattctaccattagttatcgatgtgggacaataaactccgtcattc |
36845970 |
T |
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| Q |
202 |
ttcggtctgtgct |
214 |
Q |
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| T |
36845969 |
ttcggtctttgct |
36845957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 36846186 - 36846101
Alignment:
| Q |
20 |
tgagctaattaaatcaagtcaataaggtaatagaaccataccaaccatctcactcaactagctagaatgaaaaaccgtataaaact |
105 |
Q |
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| T |
36846186 |
tgagctaattaaatcaagtcaataaggtaatagaaccataccaaccatctcactcaactagctagaataaaaaaccgtttaaaact |
36846101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 36847884 - 36847825
Alignment:
| Q |
155 |
ctattctaccattagttatcgatgtgggacaataaactccgtcattcttcggtctgtgct |
214 |
Q |
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|||||||| | |||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
36847884 |
ctattctagcgttagttatcgatgtgggacaataaactcagtcattcttcggtatgtgct |
36847825 |
T |
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