View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20572_low_2 (Length: 499)
Name: NF20572_low_2
Description: NF20572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20572_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 16 - 485
Target Start/End: Original strand, 34628105 - 34628586
Alignment:
| Q |
16 |
aattgcaacgtttttcccaataattcagtccttgataaaatttaatcgatcaaatcatcaaaatggattcatgtgtcgttgatgcatgtggaaaggatag |
115 |
Q |
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| T |
34628105 |
aattgcaacgtttttcccaataattcagtccttgataaaatttaatcgatcaaatcatcaaaatggattcatgtgtcgttgatgcatgtggaaaggatag |
34628204 |
T |
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| Q |
116 |
cggaggcaaatgcatacctacgtatgcatgagcatggcgcggtga----------agcgcacatgtgtattacatagacggagatagaagaaagatcgac |
205 |
Q |
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| T |
34628205 |
cggaggcaaatgcatacctacgtatgcatgagcatggcgcggtgatgtgcacaaaagcacacatatgtattacatagacggagatagaagaaagatcgac |
34628304 |
T |
|
| Q |
206 |
atagaccatggtcctccgcttaaatttcgctcatatttgtggagnnnnnnnaaatgacaaatattagcggttagagtaatatttacttttttatgtcata |
305 |
Q |
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| T |
34628305 |
atagaccatggtcctccgcttaaatttcgctcatatttgtggagtttttttaaatgacaaatattagcggttagagtaatatttacttttttatgtcata |
34628404 |
T |
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| Q |
306 |
tgtgtggattgagttaacccacttggggttagtatgatcagcggcgaatcttgagttattttgttgagggtgtcaaaaatgtattaaatcgtttcaagtc |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || || ||||||| ||||||||||||| ||||| |
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| T |
34628405 |
tgtgtggattgagttaacccacttggggttagtatgatcagcggcggatcttgagttattttgttggggatgccaaaaatatattaaatcgttt-aagtc |
34628503 |
T |
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| Q |
406 |
tccacatg---nnnnnnnnnaatagaatatattacaaattagaggcagcaggactcaaaccgacaactttacgctagaataat |
485 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||| |
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| T |
34628504 |
tccacatgttttttttttttaatagaatatattacaaattagaggcagcaggactcaaatcaacaactttacgctaaaataat |
34628586 |
T |
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